Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   EJH97_RS04095 Genome accession   NZ_CP034389
Coordinates   856259..857479 (+) Length   406 a.a.
NCBI ID   WP_000794251.1    Uniprot ID   -
Organism   Escherichia coli strain RS571     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 851259..862479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJH97_RS04080 (EJH97_04080) rfbA 851404..852282 (+) 879 WP_029391971.1 glucose-1-phosphate thymidylyltransferase RfbA -
  EJH97_RS04085 (EJH97_04085) rfbC 852349..852900 (+) 552 WP_021526989.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  EJH97_RS04090 (EJH97_04090) - 852950..855097 (+) 2148 WP_029391970.1 capsular polysaccharide biosynthesis protein -
  EJH97_RS04095 (EJH97_04095) kpsS 856259..857479 (+) 1221 WP_000794251.1 capsular biosynthesis protein Regulator
  EJH97_RS04100 (EJH97_04100) - 857505..857735 (-) 231 Protein_804 hypothetical protein -
  EJH97_RS04105 (EJH97_04105) - 857841..858017 (-) 177 WP_057950854.1 DUF957 domain-containing protein -
  EJH97_RS04110 (EJH97_04110) - 858034..858401 (-) 368 Protein_806 DUF5983 family protein -
  EJH97_RS04115 (EJH97_04115) cbtA 858461..858838 (-) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EJH97_RS04120 (EJH97_04120) cbeA 858927..859295 (-) 369 Protein_808 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EJH97_RS04125 (EJH97_04125) - 859369..859590 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  EJH97_RS04130 (EJH97_04130) radC 859659..860135 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  EJH97_RS04135 (EJH97_04135) - 860151..860636 (-) 486 WP_000849556.1 antirestriction protein -
  EJH97_RS04140 (EJH97_04140) - 860691..861509 (-) 819 WP_057950853.1 DUF932 domain-containing protein -
  EJH97_RS04150 (EJH97_04150) - 861627..861822 (-) 196 Protein_813 DUF905 family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48437.92 Da        Isoelectric Point: 10.1710

>NTDB_id=289336 EJH97_RS04095 WP_000794251.1 856259..857479(+) (kpsS) [Escherichia coli strain RS571]
MKNNALSILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=289336 EJH97_RS04095 WP_000794251.1 856259..857479(+) (kpsS) [Escherichia coli strain RS571]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATGTTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGGGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGACGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ATGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382