Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   DDE02_RS10195 Genome accession   NZ_CP029005
Coordinates   2102073..2102453 (-) Length   126 a.a.
NCBI ID   WP_086376637.1    Uniprot ID   A0A8I1H4G2
Organism   Acinetobacter pittii strain AbW39     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2097073..2107453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE02_RS10165 (DDE02_10275) tadA 2097137..2097640 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  DDE02_RS10170 (DDE02_10280) hibch 2097646..2098770 (-) 1125 WP_016803061.1 enoyl-CoA hydratase/isomerase family protein -
  DDE02_RS10175 (DDE02_10285) ung 2098767..2099480 (-) 714 WP_002121342.1 uracil-DNA glycosylase -
  DDE02_RS10180 (DDE02_10290) - 2099534..2100130 (-) 597 WP_002121363.1 6-carboxytetrahydropterin synthase -
  DDE02_RS10185 (DDE02_10295) gspK 2100358..2101317 (-) 960 WP_005076277.1 type II secretion system minor pseudopilin GspK -
  DDE02_RS10190 (DDE02_10300) xcpW 2101318..2102073 (-) 756 WP_005069530.1 type II secretion system minor pseudopilin GspJ Machinery gene
  DDE02_RS10195 (DDE02_10305) xcpV 2102073..2102453 (-) 381 WP_086376637.1 type II secretion system minor pseudopilin GspI Machinery gene
  DDE02_RS10200 (DDE02_10310) - 2102443..2102997 (-) 555 WP_005069534.1 type II secretion system protein -
  DDE02_RS10205 (DDE02_10315) - 2103004..2103612 (-) 609 WP_161511959.1 TetR/AcrR family transcriptional regulator -
  DDE02_RS10210 (DDE02_10320) ycfH 2103649..2104422 (-) 774 WP_005069538.1 TatD family hydrolase -
  DDE02_RS10215 (DDE02_10325) pilZ 2104440..2104781 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  DDE02_RS10220 (DDE02_10330) holB 2104792..2105772 (-) 981 WP_002121362.1 DNA polymerase III subunit delta' -
  DDE02_RS10225 (DDE02_10335) kdsB 2105786..2106547 (-) 762 WP_002121419.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13964.11 Da        Isoelectric Point: 9.4463

>NTDB_id=289257 DDE02_RS10195 WP_086376637.1 2102073..2102453(-) (xcpV) [Acinetobacter pittii strain AbW39]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSTQSTISPNVQKVDVQVSLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=289257 DDE02_RS10195 WP_086376637.1 2102073..2102453(-) (xcpV) [Acinetobacter pittii strain AbW39]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGTTAACTAA
AGTAGCAATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCACAGTTTGTCGCAATGAATGAAGTTG
CTTTAATGGAAATAAATCAGGAATGGCTCGAAGGTACACAAAGCAAGCAAGTGACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCTACGCAATCTACAATTAGTCCAAATGTTCAAAAAGTAGATGTACAAGTTAGTTTATATGATTCTGATAAGGG
GAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTACCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-102)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937

Multiple sequence alignment