Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | EJB16_RS07450 | Genome accession | NZ_CP034384 |
| Coordinates | 1549588..1550064 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli O157:H7 strain FRIK804 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1544588..1555064
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EJB16_RS07430 (EJB16_07770) | - | 1545867..1546772 (+) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
| EJB16_RS07435 (EJB16_07775) | - | 1546769..1547839 (+) | 1071 | WP_000102669.1 | patatin-like phospholipase family protein | - |
| EJB16_RS07440 (EJB16_07785) | - | 1548179..1548997 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| EJB16_RS07445 (EJB16_07790) | - | 1549087..1549572 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| EJB16_RS07450 (EJB16_07795) | radC | 1549588..1550064 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| EJB16_RS07455 (EJB16_07800) | - | 1550127..1550348 (+) | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| EJB16_RS07460 (EJB16_07805) | - | 1550511..1550885 (+) | 375 | WP_001280954.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| EJB16_RS07465 (EJB16_07810) | - | 1550932..1551306 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| EJB16_RS07470 (EJB16_07815) | - | 1551303..1551794 (+) | 492 | WP_000976853.1 | DUF5983 family protein | - |
| EJB16_RS07475 (EJB16_07820) | - | 1551806..1552003 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| EJB16_RS07480 (EJB16_07825) | - | 1552088..1552930 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| EJB16_RS07490 (EJB16_07835) | ghrA | 1553401..1554339 (+) | 939 | WP_000351284.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=289256 EJB16_RS07450 WP_001186738.1 1549588..1550064(+) (radC) [Escherichia coli O157:H7 strain FRIK804]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=289256 EJB16_RS07450 WP_001186738.1 1549588..1550064(+) (radC) [Escherichia coli O157:H7 strain FRIK804]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |