Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DDE02_RS02095 Genome accession   NZ_CP029005
Coordinates   439222..439851 (-) Length   209 a.a.
NCBI ID   WP_002116884.1    Uniprot ID   A0A8I1HEA6
Organism   Acinetobacter pittii strain AbW39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 434222..444851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE02_RS02060 (DDE02_02075) mlaE 434555..435331 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  DDE02_RS02065 (DDE02_02080) - 435331..436011 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  DDE02_RS02070 (DDE02_02085) - 436038..436679 (+) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  DDE02_RS02075 (DDE02_02090) - 436691..436978 (+) 288 WP_019767454.1 lipid asymmetry maintenance protein MlaB -
  DDE02_RS02080 (DDE02_02095) - 437051..438064 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  DDE02_RS02085 (DDE02_02100) - 438223..438804 (+) 582 WP_002116857.1 TIGR00730 family Rossman fold protein -
  DDE02_RS02090 (DDE02_02105) mutT 438819..439220 (+) 402 WP_002116701.1 NUDIX domain-containing protein -
  DDE02_RS02095 (DDE02_02110) comF 439222..439851 (-) 630 WP_002116884.1 ComF family protein Machinery gene
  DDE02_RS02100 (DDE02_02115) recG 439844..441889 (-) 2046 WP_161511723.1 ATP-dependent DNA helicase RecG -
  DDE02_RS02105 (DDE02_02120) - 441910..442725 (+) 816 WP_019767456.1 NAD-dependent epimerase/dehydratase family protein -
  DDE02_RS02110 (DDE02_02125) - 442805..443788 (+) 984 WP_002117028.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24635.84 Da        Isoelectric Point: 9.9325

>NTDB_id=289248 DDE02_RS02095 WP_002116884.1 439222..439851(-) (comF) [Acinetobacter pittii strain AbW39]
MFNFLNFKHLIKLFSPCSLCELDTREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKELTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATLKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=289248 DDE02_RS02095 WP_002116884.1 439222..439851(-) (comF) [Acinetobacter pittii strain AbW39]
ATGTTTAATTTTTTAAACTTCAAGCATCTTATTAAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGACACGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAAATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGTTTAAACGAGCACTCTCAAAAAGAACTTACTCGGCTAGAACGCTTTGAAAATATCGAACAACAATTTTTACCCCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
CCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCGGCAACACTAAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.495

98.565

0.823
  comF Acinetobacter baumannii D1279779

82.524

98.565

0.813

Multiple sequence alignment