Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   DDE02_RS01715 Genome accession   NZ_CP029005
Coordinates   361463..362464 (+) Length   333 a.a.
NCBI ID   WP_002116811.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbW39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356463..367464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE02_RS01685 (DDE02_01695) - 358019..358174 (-) 156 Protein_325 hypothetical protein -
  DDE02_RS01690 (DDE02_01700) rpoZ 358213..358491 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  DDE02_RS01695 (DDE02_01705) gmk 358564..359193 (-) 630 WP_002116973.1 guanylate kinase -
  DDE02_RS01700 (DDE02_01710) ispH 359316..360266 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DDE02_RS01705 (DDE02_01715) fimU 360436..360909 (+) 474 WP_016802756.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DDE02_RS01710 (DDE02_01720) pilV 360903..361463 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  DDE02_RS01715 (DDE02_01725) pilW 361463..362464 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  DDE02_RS01720 (DDE02_01730) pilX 362461..363270 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DDE02_RS01725 (DDE02_01735) pilY1 363282..367136 (+) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35802.50 Da        Isoelectric Point: 6.6395

>NTDB_id=289243 DDE02_RS01715 WP_002116811.1 361463..362464(+) (pilW) [Acinetobacter pittii strain AbW39]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTASTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSNAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQMSVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=289243 DDE02_RS01715 WP_002116811.1 361463..362464(+) (pilW) [Acinetobacter pittii strain AbW39]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTGGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGGCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACAACCCCTTGGGGCGGTGTTGTATTAACTGCTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACTTATATTGCTGACACATTACTTAGTCGTGGTGCAGGCGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAAATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACAAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGACTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATGTCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.985

100

0.85

Multiple sequence alignment