Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   DDE02_RS01705 Genome accession   NZ_CP029005
Coordinates   360436..360909 (+) Length   157 a.a.
NCBI ID   WP_016802756.1    Uniprot ID   A0A1C2SAU9
Organism   Acinetobacter pittii strain AbW39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355436..365909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE02_RS01680 (DDE02_01690) spoT 355898..358003 (-) 2106 WP_002116807.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  DDE02_RS01685 (DDE02_01695) - 358019..358174 (-) 156 Protein_325 hypothetical protein -
  DDE02_RS01690 (DDE02_01700) rpoZ 358213..358491 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  DDE02_RS01695 (DDE02_01705) gmk 358564..359193 (-) 630 WP_002116973.1 guanylate kinase -
  DDE02_RS01700 (DDE02_01710) ispH 359316..360266 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DDE02_RS01705 (DDE02_01715) fimU 360436..360909 (+) 474 WP_016802756.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DDE02_RS01710 (DDE02_01720) pilV 360903..361463 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  DDE02_RS01715 (DDE02_01725) pilW 361463..362464 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  DDE02_RS01720 (DDE02_01730) pilX 362461..363270 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16939.62 Da        Isoelectric Point: 7.7942

>NTDB_id=289241 DDE02_RS01705 WP_016802756.1 360436..360909(+) (fimU) [Acinetobacter pittii strain AbW39]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKNQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=289241 DDE02_RS01705 WP_016802756.1 360436..360909(+) (fimU) [Acinetobacter pittii strain AbW39]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAACCAAGCCATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCAACGACTCTAACTTTTAATGCGAATGGGGTGATAACCAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2SAU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879

Multiple sequence alignment