Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   APPSER1_RS08060 Genome accession   NZ_CP029003
Coordinates   1732679..1733023 (-) Length   114 a.a.
NCBI ID   WP_005599904.1    Uniprot ID   A3N254
Organism   Actinobacillus pleuropneumoniae serovar 1 str. 4074     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1727679..1738023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APPSER1_RS08050 (APPSER1_08050) hsdR 1729158..1731521 (-) 2364 WP_005599900.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  APPSER1_RS08055 (APPSER1_08055) asd 1731638..1732528 (-) 891 WP_005599901.1 archaetidylserine decarboxylase -
  APPSER1_RS08060 (APPSER1_08060) comEA/comE1 1732679..1733023 (-) 345 WP_005599904.1 ComEA family DNA-binding protein Machinery gene
  APPSER1_RS08065 (APPSER1_08065) - 1733324..1734715 (+) 1392 WP_005599906.1 LysM-like peptidoglycan-binding domain-containing protein -
  APPSER1_RS08070 (APPSER1_08070) - 1734837..1735241 (+) 405 WP_005599908.1 MliC family protein -
  APPSER1_RS08075 (APPSER1_08075) waaF 1735323..1736360 (+) 1038 WP_043991944.1 lipopolysaccharide heptosyltransferase II -
  APPSER1_RS08080 (APPSER1_08080) rfaC 1736435..1737394 (+) 960 WP_005599912.1 lipopolysaccharide heptosyltransferase RfaC -
  APPSER1_RS08085 (APPSER1_08085) rpsL 1737516..1737890 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12446.30 Da        Isoelectric Point: 10.2030

>NTDB_id=289215 APPSER1_RS08060 WP_005599904.1 1732679..1733023(-) (comEA/comE1) [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
MKKFARFSISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQAIVDY
RTKNGAFITIEQLTEVSGIGKATLEKNRERITLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=289215 APPSER1_RS08060 WP_005599904.1 1732679..1733023(-) (comEA/comE1) [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
ATGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAAGCCTAATAATCC
GCCCGTTTCCGAACCGACTCCCGTAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAAATCAAGTGAATA
TCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTGGTGGGAATCGGTGAGAAAAAAGCACAAGCGATTGTCGATTAC
CGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAGCGACACTAGAGAAAAA
TCGCGAACGCATCACGCTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N254

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.588
  comE1/comEA Haemophilus influenzae Rd KW20

47.115

91.228

0.43

Multiple sequence alignment