Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EIP87_RS13445 Genome accession   NZ_CP034354
Coordinates   2815567..2816241 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain IMP-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2810567..2821241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIP87_RS13415 (EIP87_13415) - 2810742..2812076 (+) 1335 WP_023090969.1 aspartate aminotransferase family protein -
  EIP87_RS13420 (EIP87_13420) - 2812142..2812504 (+) 363 WP_003096551.1 cupin domain-containing protein -
  EIP87_RS13425 (EIP87_13425) rpmG 2812638..2812793 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  EIP87_RS13430 (EIP87_13430) rpmB 2812805..2813041 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  EIP87_RS13435 (EIP87_13435) - 2813396..2814976 (+) 1581 WP_010793642.1 ABC transporter substrate-binding protein -
  EIP87_RS13440 (EIP87_13440) - 2815002..2815550 (+) 549 WP_003098290.1 hypothetical protein -
  EIP87_RS13445 (EIP87_13445) radC 2815567..2816241 (-) 675 WP_003096559.1 DNA repair protein RadC Machinery gene
  EIP87_RS13450 (EIP87_13450) coaBC 2816381..2817589 (+) 1209 WP_003114358.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EIP87_RS13455 (EIP87_13455) dut 2817597..2818052 (+) 456 WP_003098293.1 dUTP diphosphatase -
  EIP87_RS13460 (EIP87_13460) - 2818089..2820695 (+) 2607 WP_034052929.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=289181 EIP87_RS13445 WP_003096559.1 2815567..2816241(-) (radC) [Pseudomonas aeruginosa strain IMP-13]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=289181 EIP87_RS13445 WP_003096559.1 2815567..2816241(-) (radC) [Pseudomonas aeruginosa strain IMP-13]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397

Multiple sequence alignment