Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrQ   Type   Regulator
Locus tag   DCE79_RS12885 Genome accession   NZ_CP029002
Coordinates   2645207..2647036 (-) Length   609 a.a.
NCBI ID   WP_108713442.1    Uniprot ID   A0A2S1H3K7
Organism   Lysinibacillus sp. 2017     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 2640207..2652036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCE79_RS12875 (DCE79_12875) - 2642273..2642956 (+) 684 WP_108713440.1 TraR/DksA C4-type zinc finger protein -
  DCE79_RS12880 (DCE79_12880) - 2643331..2644998 (+) 1668 WP_108713441.1 FAD-dependent oxidoreductase -
  DCE79_RS12885 (DCE79_12885) rcrQ 2645207..2647036 (-) 1830 WP_108713442.1 ABC transporter ATP-binding protein Regulator
  DCE79_RS12890 (DCE79_12890) rcrP 2647029..2648777 (-) 1749 WP_108713443.1 ABC transporter ATP-binding protein Regulator
  DCE79_RS12895 (DCE79_12895) - 2649083..2649634 (-) 552 WP_108713444.1 PadR family transcriptional regulator -
  DCE79_RS12900 (DCE79_12900) - 2649697..2650848 (-) 1152 WP_108713445.1 YhgE/Pip domain-containing protein -
  DCE79_RS12905 (DCE79_12905) - 2651282..2651488 (-) 207 WP_108713446.1 hypothetical protein -

Sequence


Protein


Download         Length: 609 a.a.        Molecular weight: 67135.85 Da        Isoelectric Point: 6.1417

>NTDB_id=289181 DCE79_RS12885 WP_108713442.1 2645207..2647036(-) (rcrQ) [Lysinibacillus sp. 2017]
MTNEHTELDEQQKSAKPAFGPPRMGAQGKANDFKKTMKKLAVYCKGFMPFVGIALVLALIGTAFTVYGPSLLSDLTDMIQ
KGLFTGIDLESVKKIGILLCVFYGLSFIFSYVQGFIMATVTQRITKKMRTDLSTKMNRLPLNYYDQTSIGNVLSRVTNDV
DTIGQTLNNSIGQLVTSVVTFIGVLGMMFYTNWIMALTGILATLIGFGLMSVIMGTSQKYFVAQQQQLGELNGHIEEMYT
GHQIVQAYNGERDAKQKFDGVNNVLYHNAWKAQFLSGLMMPIMQFIGNFGYVAICVVGAILVTKGSISIGVIVAFMVYVR
LFTQPLAQLAQAATSLQSTAAASERVFEFLEEKELDNESNKQLELPVIKGNVSFDHVAFGYDEKPIIQDFSLAVMAGQKI
AIVGPTGAGKTTLVNLLMRFYEVNSGTIKIDDIPIHDMTREQVHEQFCMVLQDTWLFEGTVRDNIAYAKQNATQAEIDTA
AQAVGIHHMIQAMPNGYDTILDEKITLSIGQKQLITIARAIVANAPLLILDEATSSVDTRTEMLIQQAMDTLMKGKTSFV
IAHRLSTIKNADVILVMKEGSVLETGTHNELLAQKGFYADLYNSQFETA

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=289181 DCE79_RS12885 WP_108713442.1 2645207..2647036(-) (rcrQ) [Lysinibacillus sp. 2017]
ATGACTAATGAACATACTGAATTAGACGAGCAGCAAAAAAGTGCTAAGCCTGCATTCGGCCCTCCTCGAATGGGTGCACA
AGGAAAAGCTAATGATTTTAAGAAAACGATGAAAAAGCTCGCTGTTTATTGCAAAGGTTTTATGCCATTTGTAGGAATTG
CATTAGTATTAGCACTGATTGGCACAGCCTTTACGGTATATGGACCTAGTTTGTTAAGTGATTTAACGGATATGATTCAA
AAGGGCTTGTTTACAGGAATTGATTTAGAGTCTGTTAAAAAAATAGGGATTTTACTTTGTGTATTCTATGGGTTGAGCTT
TATATTTAGCTATGTACAAGGATTTATTATGGCGACCGTTACGCAGCGTATTACGAAAAAAATGCGTACGGATTTATCAA
CCAAGATGAATCGTTTGCCGTTAAACTATTACGATCAAACGAGTATCGGAAATGTGCTAAGTCGCGTGACGAATGACGTG
GACACGATTGGACAAACGTTAAATAACAGTATTGGTCAATTGGTTACGTCAGTTGTTACCTTTATCGGCGTATTAGGCAT
GATGTTTTATACGAACTGGATCATGGCACTGACGGGTATTTTGGCTACACTTATTGGCTTTGGCTTAATGAGCGTAATTA
TGGGGACATCGCAAAAATATTTTGTCGCGCAACAGCAACAGCTAGGGGAGCTTAATGGTCATATTGAAGAAATGTATACA
GGTCACCAAATTGTGCAGGCATATAATGGTGAGCGTGATGCGAAGCAGAAATTTGATGGCGTCAATAATGTACTTTATCA
CAATGCGTGGAAAGCACAGTTTTTATCGGGTTTAATGATGCCAATTATGCAGTTTATCGGCAACTTTGGTTATGTGGCAA
TTTGTGTGGTCGGAGCGATTTTAGTAACGAAGGGCTCAATCTCAATTGGTGTTATCGTTGCCTTTATGGTGTATGTTCGC
CTATTTACACAGCCTTTAGCGCAACTAGCTCAAGCAGCGACAAGCTTGCAATCGACAGCCGCAGCTAGTGAACGAGTTTT
TGAGTTTTTAGAAGAAAAAGAGTTGGACAATGAATCAAATAAACAGCTTGAATTGCCAGTGATTAAAGGCAATGTATCAT
TTGATCATGTGGCATTTGGTTATGACGAAAAGCCGATTATCCAAGATTTCTCATTAGCAGTGATGGCAGGGCAAAAAATC
GCAATTGTTGGCCCAACTGGCGCCGGGAAAACAACACTTGTAAATTTATTAATGCGTTTTTATGAAGTGAATAGTGGAAC
GATTAAAATTGATGACATCCCCATTCACGACATGACGCGTGAGCAGGTGCATGAGCAATTTTGTATGGTACTTCAAGATA
CCTGGTTATTTGAAGGCACAGTTCGTGACAATATTGCGTATGCAAAACAAAATGCTACACAGGCAGAGATTGATACCGCA
GCTCAGGCCGTAGGTATTCATCATATGATTCAAGCGATGCCAAACGGCTACGATACGATTTTAGATGAAAAAATCACATT
ATCTATCGGGCAAAAGCAGTTGATTACAATCGCACGTGCTATTGTAGCGAATGCACCACTATTAATCTTAGATGAGGCAA
CTAGTTCCGTAGATACGCGTACAGAAATGCTTATACAACAGGCAATGGATACGTTGATGAAGGGCAAAACGTCATTCGTC
ATTGCACATCGACTGTCAACAATCAAAAATGCCGATGTGATTTTAGTTATGAAAGAAGGCTCCGTATTAGAAACTGGTAC
TCATAATGAACTCCTTGCACAAAAAGGGTTTTACGCAGATTTATATAATAGTCAGTTTGAAACGGCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2S1H3K7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.38

94.745

0.506


Multiple sequence alignment