Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DCE79_RS12890 Genome accession   NZ_CP029002
Coordinates   2647029..2648777 (-) Length   582 a.a.
NCBI ID   WP_108713443.1    Uniprot ID   A0A2S1H3I8
Organism   Lysinibacillus sp. 2017     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2642029..2653777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCE79_RS12875 (DCE79_12875) - 2642273..2642956 (+) 684 WP_108713440.1 TraR/DksA C4-type zinc finger protein -
  DCE79_RS12880 (DCE79_12880) - 2643331..2644998 (+) 1668 WP_108713441.1 FAD-dependent oxidoreductase -
  DCE79_RS12885 (DCE79_12885) rcrQ 2645207..2647036 (-) 1830 WP_108713442.1 ABC transporter ATP-binding protein Regulator
  DCE79_RS12890 (DCE79_12890) rcrP 2647029..2648777 (-) 1749 WP_108713443.1 ABC transporter ATP-binding protein Regulator
  DCE79_RS12895 (DCE79_12895) - 2649083..2649634 (-) 552 WP_108713444.1 PadR family transcriptional regulator -
  DCE79_RS12900 (DCE79_12900) - 2649697..2650848 (-) 1152 WP_108713445.1 YhgE/Pip domain-containing protein -
  DCE79_RS12905 (DCE79_12905) - 2651282..2651488 (-) 207 WP_108713446.1 hypothetical protein -
  DCE79_RS12910 (DCE79_12910) - 2651516..2652070 (-) 555 WP_108713447.1 GIY-YIG nuclease family protein -
  DCE79_RS12915 (DCE79_12915) - 2652094..2653083 (-) 990 WP_108713448.1 YafY family protein -
  DCE79_RS18545 - 2653265..2653441 (+) 177 WP_159083105.1 hypothetical protein -
  DCE79_RS12920 (DCE79_12920) - 2653462..2653707 (+) 246 WP_108713449.1 hypothetical protein -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64841.65 Da        Isoelectric Point: 6.9786

>NTDB_id=289182 DCE79_RS12890 WP_108713443.1 2647029..2648777(-) (rcrP) [Lysinibacillus sp. 2017]
MLRILSYLTSKERLLVAVSLAFIVIQVWLDLKLPDYMAEITMLIQIDGTTVSNLWQPGVMMLLCAVGSMIAAIIVGYFAA
KIAAGLAKRIRGMVFEKTISFSMAEMNHFSTPSLITRSTNDITQVQMIVAMGLQVIIKAPILAVWAIIKIYNKNFEWTAA
TGVALIFLVILILVVIFFAIPKFRIIQTLTDNLNRITRENLTGIRVIRAYNAEHYQLGKFEKANTEVTMTNLFVNRLMAL
IGPSMMLLLSGLSVAIYWIGAYLIQNADQTDKLTLFSNMVVFSSYAMQVIMAFMMVSMIFIMLPRAQVSAKRILEVLTTR
PTIHDGSLSIDSGIEKVQFNNVSFHYPNGEGNVLSDLKFTAEKGETIAIIGSTGSGKTTAIQLIPRFFDATEGEVLINGE
NIKNYKQEALRDEIGYVSQSAFLFRGTVKSNVTYGSEPEEQEWLKQVIAIAQGTEFVEKMDDSYEAAIAQGGKNVSGGQK
QRLSIARAIYKKPSIYLFDDSFSALDYTTDRKLRSALKETMDDAITFIVAQRIGTIKDANRILVFEQGQIVGNGTHGELM
KNCETYQEIAYSQLSKEELAND

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=289182 DCE79_RS12890 WP_108713443.1 2647029..2648777(-) (rcrP) [Lysinibacillus sp. 2017]
ATGCTAAGAATCTTAAGTTATTTGACGAGCAAAGAAAGGCTACTTGTAGCTGTCAGTTTAGCTTTTATCGTGATCCAAGT
ATGGCTCGATTTAAAGTTACCCGACTACATGGCCGAGATTACGATGCTTATTCAAATAGATGGCACAACGGTTTCGAATT
TATGGCAACCGGGTGTGATGATGCTTTTATGTGCAGTCGGCAGTATGATTGCGGCCATTATCGTTGGTTATTTTGCGGCG
AAAATTGCGGCGGGTTTAGCGAAGCGAATTCGTGGCATGGTATTTGAAAAAACGATTTCCTTCTCAATGGCGGAAATGAA
TCATTTTTCGACGCCGAGTTTGATTACCCGTTCAACAAATGATATTACGCAAGTTCAAATGATTGTTGCAATGGGTTTGC
AAGTTATTATTAAAGCACCGATTTTAGCGGTTTGGGCTATTATTAAAATTTATAATAAAAATTTTGAGTGGACTGCTGCG
ACAGGTGTGGCGCTTATTTTCCTAGTAATATTAATTCTTGTCGTCATATTTTTTGCCATTCCAAAATTTAGAATCATTCA
AACATTAACGGATAATTTAAATCGAATTACCCGTGAAAATTTAACCGGGATACGCGTTATTCGAGCTTATAATGCAGAAC
ATTATCAGCTTGGAAAATTTGAAAAGGCCAATACAGAAGTGACGATGACTAATTTATTCGTCAATCGATTAATGGCGTTA
ATTGGTCCTTCGATGATGCTCCTTTTATCAGGCTTAAGCGTGGCGATTTATTGGATTGGAGCGTATTTAATCCAAAATGC
CGATCAAACAGATAAACTCACTTTATTTTCAAATATGGTCGTCTTTTCTTCTTATGCCATGCAAGTCATTATGGCATTTA
TGATGGTTAGTATGATTTTTATCATGCTACCGCGTGCGCAAGTGTCAGCGAAGCGTATTTTAGAAGTATTAACTACTCGT
CCAACCATACATGACGGCTCACTTTCAATAGACAGTGGTATTGAAAAAGTTCAATTCAACAATGTTTCATTTCATTATCC
AAACGGTGAAGGCAATGTGCTGTCAGATTTGAAATTTACGGCGGAAAAAGGTGAAACGATTGCCATTATTGGTTCGACAG
GTAGTGGGAAAACAACTGCCATTCAGCTTATCCCGCGTTTCTTTGATGCAACGGAAGGTGAAGTGCTTATCAATGGTGAA
AATATCAAAAATTATAAGCAGGAAGCATTACGAGATGAAATTGGTTATGTTTCACAATCAGCCTTTTTATTTAGAGGAAC
GGTAAAGTCGAACGTTACGTATGGCTCGGAACCTGAGGAACAAGAATGGTTAAAACAAGTGATTGCGATTGCACAGGGAA
CAGAATTCGTTGAAAAAATGGATGATTCTTATGAGGCTGCAATTGCGCAAGGTGGTAAAAACGTCTCTGGCGGACAAAAA
CAGCGATTATCAATTGCGCGGGCGATTTACAAAAAGCCTTCGATCTATTTATTTGATGATTCGTTCTCAGCGCTGGACTA
TACAACGGACCGTAAATTGCGTTCAGCACTTAAAGAAACGATGGATGATGCCATTACGTTTATTGTGGCACAGCGTATCG
GTACGATTAAGGATGCCAATCGCATTTTAGTGTTTGAGCAAGGGCAAATTGTAGGCAACGGTACACATGGCGAATTAATG
AAGAACTGTGAAACGTATCAAGAAATTGCTTATTCACAGCTTTCAAAGGAGGAGCTAGCGAATGACTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(354-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S1H3I8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.997

100

0.503

Multiple sequence alignment