Detailed information NTG0289158

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EIP87_RS08680
• Genome accession: NZ_CP034354
• Coordinates: 1790027..1790899 (+)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain IMP-13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1785027..1795899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EIP87_RS08665 (EIP87_08665)	pilA/pilAI	1786410..1786874 (-)	465	WP_023129290.1	pilin	Machinery gene
EIP87_RS08670 (EIP87_08670)	pilB	1787105..1788805 (+)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EIP87_RS08675 (EIP87_08675)	pilC	1788809..1790026 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
EIP87_RS08680 (EIP87_08680)	pilD	1790027..1790899 (+)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
EIP87_RS08685 (EIP87_08685)	coaE	1790896..1791507 (+)	612	WP_033982615.1	dephospho-CoA kinase	-
EIP87_RS08690 (EIP87_08690)	yacG	1791504..1791704 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
EIP87_RS08695 (EIP87_08695)	-	1791741..1791950 (-)	210	WP_003094660.1	hypothetical protein	-
EIP87_RS08700 (EIP87_08700)	-	1792056..1792745 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
EIP87_RS08705 (EIP87_08705)	-	1792742..1793212 (-)	471	WP_003094664.1	hypothetical protein	-
EIP87_RS08710 (EIP87_08710)	-	1793209..1793634 (-)	426	WP_009875877.1	GNAT family N-acetyltransferase	-
EIP87_RS08715 (EIP87_08715)	-	1793767..1794396 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
EIP87_RS08720 (EIP87_08720)	-	1794393..1794842 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
EIP87_RS08725 (EIP87_08725)	-	1794868..1795038 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=289158 EIP87_RS08680 WP_023084740.1 1790027..1790899(+) (pilD) [Pseudomonas aeruginosa strain IMP-13]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=289158 EIP87_RS08680 WP_023084740.1 1790027..1790899(+) (pilD) [Pseudomonas aeruginosa strain IMP-13]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472