Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D1J63_RS31510 Genome accession   NZ_CP034353
Coordinates   6964975..6965637 (-) Length   220 a.a.
NCBI ID   WP_125633544.1    Uniprot ID   -
Organism   Streptomyces sp. KPB2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6959975..6970637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS31490 (D1J63_31490) - 6960482..6961360 (-) 879 WP_164713057.1 alpha/beta fold hydrolase -
  D1J63_RS31495 (D1J63_31495) - 6961552..6962439 (+) 888 WP_125633538.1 RNA polymerase sigma-70 factor -
  D1J63_RS31500 (D1J63_31500) - 6962627..6963388 (+) 762 WP_125633540.1 GntR family transcriptional regulator -
  D1J63_RS31505 (D1J63_31505) - 6963720..6964874 (-) 1155 WP_125633542.1 ROK family transcriptional regulator -
  D1J63_RS31510 (D1J63_31510) vraR 6964975..6965637 (-) 663 WP_125633544.1 response regulator transcription factor Regulator
  D1J63_RS31515 (D1J63_31515) - 6965652..6966806 (-) 1155 WP_125633546.1 histidine kinase -
  D1J63_RS31520 (D1J63_31520) - 6966915..6967841 (+) 927 WP_125633548.1 ABC transporter ATP-binding protein -
  D1J63_RS31525 (D1J63_31525) - 6967838..6968563 (+) 726 WP_125633550.1 ABC transporter permease -
  D1J63_RS31530 (D1J63_31530) - 6968632..6969072 (+) 441 WP_125633552.1 hypothetical protein -
  D1J63_RS31535 (D1J63_31535) mug 6969082..6969639 (-) 558 WP_164713254.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23589.29 Da        Isoelectric Point: 5.1829

>NTDB_id=289128 D1J63_RS31510 WP_125633544.1 6964975..6965637(-) (vraR) [Streptomyces sp. KPB2]
MPVRVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRQVRPDVVAMDVRMPLLDGIEATRALLRTVAEPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRQLAAEYGDGGGNRAARAVLERARLTER
EGEVLRLMARGLSNAEIAVRLIVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=289128 D1J63_RS31510 WP_125633544.1 6964975..6965637(-) (vraR) [Streptomyces sp. KPB2]
ATGCCGGTCAGAGTGCTCCTCGTCGACGACGAACCCCTCGTACGCGCGGGCCTTCGGGCCGTGCTGGAGGCGCAGCCGGA
CATCGAGGTGGTCGGGGAGGCGGCCGACGGAGCGGCGGTGATTCCGCTGGTGCGGCAGGTGCGGCCGGACGTGGTCGCCA
TGGACGTCCGGATGCCGCTGCTGGACGGCATCGAGGCCACGCGCGCGCTGCTGCGGACGGTGGCCGAACCGCCGAAGATC
CTCGTGGTGACGACCTTCGAGAACGACGAGTACGTGTACGAAGCGCTGCGTGCGGGCGCGGACGGGTTCCTGCTCAAGCG
CGCCCGCCCGGCCGAGATCGTGCATGCGGTACGGCTGATCGCCGAGGGCGAGTCCCTGCTGTTCCCCGCCTCGGTGCGGC
AGCTGGCCGCCGAGTACGGCGACGGGGGCGGCAACCGGGCGGCCCGCGCGGTGCTGGAGCGGGCGCGGCTGACCGAGCGG
GAGGGCGAGGTGCTGCGCCTGATGGCGCGGGGGCTGTCGAACGCCGAGATCGCGGTGCGGCTGATCGTCGGCACCGAGAC
GGTGAAGTCGCATGTGAGCGCCGTACTGGCGAAGCTGGGCGCGCGGGACCGCACCCAGGCGGTGATCACGGCGTACGAGT
CGGGGTTCGTGGCACCCGGTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-211)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.092

98.636

0.395
  degU Bacillus subtilis subsp. subtilis str. 168

37.054

100

0.377