Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D1J63_RS28725 Genome accession   NZ_CP034353
Coordinates   6372219..6372860 (+) Length   213 a.a.
NCBI ID   WP_102927313.1    Uniprot ID   -
Organism   Streptomyces sp. KPB2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6367219..6377860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS28705 (D1J63_28705) - 6368025..6368744 (-) 720 WP_125632857.1 transglycosylase SLT domain-containing protein -
  D1J63_RS28710 (D1J63_28710) - 6369098..6370168 (-) 1071 WP_125632859.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  D1J63_RS28715 (D1J63_28715) - 6370168..6370863 (-) 696 WP_125632861.1 SDR family NAD(P)-dependent oxidoreductase -
  D1J63_RS28720 (D1J63_28720) - 6371081..6372226 (+) 1146 WP_125632863.1 GAF domain-containing sensor histidine kinase -
  D1J63_RS28725 (D1J63_28725) vraR 6372219..6372860 (+) 642 WP_102927313.1 response regulator transcription factor Regulator
  D1J63_RS28730 (D1J63_28730) chpE 6373016..6373264 (+) 249 WP_102927314.1 chaplin ChpE -
  D1J63_RS28735 (D1J63_28735) - 6373434..6374222 (-) 789 WP_125632865.1 hypothetical protein -
  D1J63_RS28740 (D1J63_28740) - 6374376..6375173 (+) 798 WP_125632867.1 ABC transporter ATP-binding protein -
  D1J63_RS28745 (D1J63_28745) - 6375228..6375659 (+) 432 WP_125632869.1 NfeD family protein -
  D1J63_RS28750 (D1J63_28750) - 6375837..6376796 (+) 960 WP_102927318.1 SPFH domain-containing protein -
  D1J63_RS28755 (D1J63_28755) - 6376912..6377418 (-) 507 WP_007388340.1 HNH endonuclease -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22936.17 Da        Isoelectric Point: 5.3572

>NTDB_id=289121 D1J63_RS28725 WP_102927313.1 6372219..6372860(+) (vraR) [Streptomyces sp. KPB2]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVDRAQELKPDVILMDVKMPGMDGVDALRRLRELDNHAR
VLVVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEESGSGPGRAGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVTG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=289121 D1J63_RS28725 WP_102927313.1 6372219..6372860(+) (vraR) [Streptomyces sp. KPB2]
GTGGCTGACGCGATCAAGGTCCTGCTCGTCGACGACCACCAGGTGGTCCGCCGGGGACTGCGCACCTTCCTGGAGGTACA
GGACGACATCGAAGTGGTCGGCGAGGCCGCCGACGGCGCCGAGGGCGTCGACCGCGCCCAGGAGCTGAAACCCGACGTCA
TCCTCATGGACGTCAAGATGCCCGGCATGGACGGCGTCGACGCCCTGCGCAGACTCCGGGAACTGGACAACCACGCGCGT
GTGCTCGTCGTCACCAGCTTCACCGAGCAGCGCACCGTCGTCCCGGCCCTGCGCGCGGGCGCCGCCGGATACGTGTACAA
GGACGTGGACCCCGACGCGCTGGCCGGCGCCATCCGCTCCGTCCACGCCGGCCACATCCTGCTCCAGCCCGAGGTCGCGG
GCGCCCTGCTGAGCCAGGAGGAGAGCGGCTCCGGACCGGGCCGAGCCGGTTCCCTCACGGAGCGGGAGCGCGAGGTGCTG
GGCCTGATCGCGGACGGCCGCTCCAACCGGGAGATCGCACGTGCGCTGGTCCTCTCCGAGAAGACCGTGAAGACCCACGT
CTCGAACATCCTCATGAAGCTCGACCTCGCCGATCGCACCCAGGCCGCCCTGTGGGCCGTGCGCCACGGGGTGACCGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.154

97.653

0.451
  degU Bacillus subtilis subsp. subtilis str. 168

37.104

100

0.385