Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D1J63_RS17730 Genome accession   NZ_CP034353
Coordinates   3996856..3997533 (-) Length   225 a.a.
NCBI ID   WP_125629886.1    Uniprot ID   -
Organism   Streptomyces sp. KPB2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3991856..4002533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS17720 (D1J63_17720) - 3993301..3995850 (-) 2550 WP_125629884.1 ABC transporter permease -
  D1J63_RS17725 (D1J63_17725) - 3995847..3996719 (-) 873 WP_164712869.1 ABC transporter ATP-binding protein -
  D1J63_RS17730 (D1J63_17730) vraR 3996856..3997533 (-) 678 WP_125629886.1 response regulator transcription factor Regulator
  D1J63_RS17735 (D1J63_17735) - 3997530..3998783 (-) 1254 WP_125629888.1 histidine kinase -
  D1J63_RS17740 (D1J63_17740) - 3998920..3999435 (-) 516 WP_102928689.1 hypothetical protein -
  D1J63_RS37200 - 3999531..3999890 (-) 360 WP_232250537.1 hypothetical protein -
  D1J63_RS17750 (D1J63_17750) - 3999967..4002051 (-) 2085 WP_125629890.1 TerD family protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24245.94 Da        Isoelectric Point: 6.4997

>NTDB_id=289097 D1J63_RS17730 WP_125629886.1 3996856..3997533(-) (vraR) [Streptomyces sp. KPB2]
MTTRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMDGLEAARRLLAPPPGVTHR
PRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAKQRPVARGNPALRLKAL
TERETEVLTHVARGQSNSEIARTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLVAPGEQ

Nucleotide


Download         Length: 678 bp        

>NTDB_id=289097 D1J63_RS17730 WP_125629886.1 3996856..3997533(-) (vraR) [Streptomyces sp. KPB2]
GTGACGACGCGCGTCATCATCGTCGACGACCAGGCCATGGTGCGGGCCGGATTCGCCGCGCTGCTGGCCGCCCAGAGCGA
CATCGACGTGGTGGGCGAGGCCCCCGACGGTGCGCAGGGCGTCGAGCTGAGCCGGCGTACACATCCGGACGTCGTGCTGA
TGGACGTGCGGATGCCCGAGATGGACGGCCTGGAGGCCGCGCGCCGGCTGCTCGCGCCCCCGCCCGGGGTCACGCACCGG
CCGCGCGTGCTCATGCTCACCACGTTCGACGTCGACGACTACGTCTACGAGGCGCTGCGGGCGGGCGCGAGCGGCTTCCT
GCTGAAGGACGCGCCGCCCGCCGACCTCATCGCCGCCGTACGGGTCGTGGCCGCGGGCGACGCGCTGCTCGCCCCCTCCG
TGACGCGCCGCCTCATCGCGGACTTCGCCAAGCAGCGCCCCGTCGCCCGGGGCAACCCGGCCCTGCGGCTCAAGGCTCTG
ACGGAACGCGAGACCGAGGTCCTCACCCACGTGGCCCGCGGGCAGTCCAACTCGGAGATCGCGCGGACGCTGGTGCTGGC
CGAGCAGACGGTGAAGACCCACGTCAGCCGCGTCCTGACCAAGCTCGACCTGCGCGACCGGGCCCAGGCGGTCGTCTTCG
CGTACGAGTCGGGCCTGGTGGCCCCCGGAGAGCAGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-214)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40

97.778

0.391
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.387