Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D1J63_RS17250 Genome accession   NZ_CP034353
Coordinates   3891465..3892130 (-) Length   221 a.a.
NCBI ID   WP_102929861.1    Uniprot ID   -
Organism   Streptomyces sp. KPB2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3886465..3897130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS17230 (D1J63_17230) - 3888028..3888492 (+) 465 WP_125629723.1 cupin domain-containing protein -
  D1J63_RS17235 (D1J63_17235) - 3888557..3888823 (+) 267 WP_125629725.1 hypothetical protein -
  D1J63_RS17240 (D1J63_17240) - 3888806..3890062 (-) 1257 WP_125629727.1 cytochrome P450 -
  D1J63_RS17245 (D1J63_17245) - 3890218..3891357 (+) 1140 WP_125629729.1 endo-1,4-beta-xylanase -
  D1J63_RS17250 (D1J63_17250) vraR 3891465..3892130 (-) 666 WP_102929861.1 response regulator transcription factor Regulator
  D1J63_RS17255 (D1J63_17255) - 3892127..3893551 (-) 1425 WP_125629732.1 histidine kinase -
  D1J63_RS17260 (D1J63_17260) - 3893565..3894251 (-) 687 WP_061443419.1 response regulator transcription factor -
  D1J63_RS17265 (D1J63_17265) - 3894248..3895660 (-) 1413 WP_125629734.1 sensor histidine kinase -
  D1J63_RS17270 (D1J63_17270) - 3895653..3896858 (-) 1206 WP_125629736.1 acyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23806.54 Da        Isoelectric Point: 4.6488

>NTDB_id=289093 D1J63_RS17250 WP_102929861.1 3891465..3892130(-) (vraR) [Streptomyces sp. KPB2]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVAGEAVNGREAVAKVRELAPDVVLMDIRMPELNGIEATREIVAADGTSKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSITKRLITEFSKLSDAPRLMPSAQAAYGDLTE
RETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=289093 D1J63_RS17250 WP_102929861.1 3891465..3892130(-) (vraR) [Streptomyces sp. KPB2]
ATGACGATCCGCGTACTGATCGCCGACGACCAGATGATGGTGCGCGAGGGCTTCTCGGTCCTGTTGAACGCGATGCCGGA
CATCGAGGTCGCCGGTGAGGCGGTCAACGGCCGGGAGGCGGTGGCCAAGGTCCGCGAGCTCGCGCCGGACGTGGTCCTGA
TGGACATCCGCATGCCCGAGCTGAACGGCATCGAGGCGACCCGGGAGATCGTCGCGGCGGACGGCACTTCGAAGGTGCTG
GTGCTGACCACCTTCGACCTCGACGAGTACGTGTACCAGGCACTGCGCGCGGGCGCGTCCGGCTTCCTCCTCAAGGACGC
CTCGGCCCGTCAGCTCGCCGACGGTGTCAGGGTGGTGGCGGCCGGCGAGGCCCTTTTGGCGCCGTCCATCACCAAGCGTC
TGATCACCGAGTTCTCCAAGCTGTCCGACGCCCCGCGCCTGATGCCCTCGGCGCAGGCGGCGTACGGCGACCTGACCGAG
CGCGAGACGGAGGTCCTGGTCCTGATCGCGCAGGGCCTGTCCAACGCGGAGATCGCCGAACGCCTGGTCGTCGCCGAGTC
GACCATCAAGACCCACGTCAGCCGCGTCCTGGTCAAGCTCGGCCTGCGCGACCGCACCCAGGCGGCGGTCTTCGCCTACG
AGGCGCGGCTGGTGACGCCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.578

98.643

0.43
  degU Bacillus subtilis subsp. subtilis str. 168

41.935

98.19

0.412