Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D1J63_RS17145 Genome accession   NZ_CP034353
Coordinates   3872070..3872669 (-) Length   199 a.a.
NCBI ID   WP_102932840.1    Uniprot ID   A0ABW8BI76
Organism   Streptomyces sp. KPB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3867070..3877669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS17120 (D1J63_17120) - 3867356..3868633 (-) 1278 WP_125629696.1 aspartate kinase -
  D1J63_RS17125 (D1J63_17125) - 3868832..3869410 (-) 579 WP_125629698.1 Uma2 family endonuclease -
  D1J63_RS17130 (D1J63_17130) - 3869461..3870456 (-) 996 WP_125629700.1 hypothetical protein -
  D1J63_RS17135 (D1J63_17135) - 3870790..3871425 (+) 636 WP_125629702.1 ankyrin repeat domain-containing protein -
  D1J63_RS17140 (D1J63_17140) - 3871418..3872077 (-) 660 WP_102932839.1 DUF5063 domain-containing protein -
  D1J63_RS17145 (D1J63_17145) recR 3872070..3872669 (-) 600 WP_102932840.1 recombination mediator RecR Machinery gene
  D1J63_RS17150 (D1J63_17150) - 3872755..3873102 (-) 348 WP_087808112.1 YbaB/EbfC family nucleoid-associated protein -
  D1J63_RS17155 (D1J63_17155) - 3873376..3874140 (+) 765 WP_125629704.1 SLATT domain-containing protein -
  D1J63_RS17160 (D1J63_17160) - 3874168..3876447 (-) 2280 WP_125629705.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21767.06 Da        Isoelectric Point: 4.9848

>NTDB_id=289092 D1J63_RS17145 WP_102932840.1 3872070..3872669(-) (recR) [Streptomyces sp. KPB2]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPADVRRLAQALMEVKAKVRFCATCGNVAQEEQCNICRDTRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIDGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=289092 D1J63_RS17145 WP_102932840.1 3872070..3872669(-) (recR) [Streptomyces sp. KPB2]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTCGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTCCTGCAGGCCGAGCCGGCCGACGTACGGCGGCTCGCCCAGGCCCTCATGGAAGTGAAGGCCAAGGTCC
GCTTCTGCGCGACCTGCGGAAACGTCGCGCAGGAGGAGCAGTGCAACATCTGCCGCGACACCCGGCGCGACCCTTCCGTC
ATCTGCGTGGTGGAGGAGCCGAAGGACGTCGTCGCCATCGAGCGCACCCGTGAGTTCCGCGGGCGCTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGACGGGGTCGGCCCCGACGACCTCCGCATCCGTGAGCTGCTGGCCCGCCTGGCGGACGGCA
CGGTCACGGAGCTGATCCTGGCCACGGACCCGAATCTGGAGGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCAGTGGGTGGCGACCTGGAGTACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

57.143

98.492

0.563
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452