Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   D1J63_RS16275 Genome accession   NZ_CP034353
Coordinates   3693927..3695336 (+) Length   469 a.a.
NCBI ID   WP_102932190.1    Uniprot ID   A0ABW8BNC8
Organism   Streptomyces sp. KPB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3688927..3700336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS16250 (D1J63_16250) - 3689478..3690410 (-) 933 WP_125629500.1 Ppx/GppA phosphatase family protein -
  D1J63_RS16255 (D1J63_16255) - 3690482..3691294 (+) 813 WP_125629503.1 hypothetical protein -
  D1J63_RS37560 - 3691371..3691499 (+) 129 WP_276323134.1 hypothetical protein -
  D1J63_RS36905 - 3691592..3693373 (-) 1782 WP_206436771.1 hypothetical protein -
  D1J63_RS16275 (D1J63_16275) radA/sms 3693927..3695336 (+) 1410 WP_102932190.1 DNA repair protein RadA Machinery gene
  D1J63_RS16280 (D1J63_16280) disA 3695418..3696542 (+) 1125 WP_030404779.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  D1J63_RS36730 - 3696563..3697408 (-) 846 WP_206436772.1 hypothetical protein -
  D1J63_RS16295 (D1J63_16295) - 3697567..3698493 (+) 927 WP_125629511.1 A/G-specific adenine glycosylase -
  D1J63_RS16300 (D1J63_16300) - 3698792..3699325 (+) 534 WP_003975479.1 SigE family RNA polymerase sigma factor -
  D1J63_RS16305 (D1J63_16305) - 3699313..3699990 (+) 678 WP_176154385.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49748.84 Da        Isoelectric Point: 7.7528

>NTDB_id=289087 D1J63_RS16275 WP_102932190.1 3693927..3695336(+) (radA/sms) [Streptomyces sp. KPB2]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPADPGKVPDGMKVLEVADMGDALRVLPRSRRREAPREEGDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=289087 D1J63_RS16275 WP_102932190.1 3693927..3695336(+) (radA/sms) [Streptomyces sp. KPB2]
ATGGCTGCCCGTACGAAGTCCGCCAAGGAACGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCATGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGTACGACGACGCCGGGGC
GCGTCACGACCTCCGCGCTGCCCATCGGCCAGGTGGACGGCCGGCAGGCGACCGCCCGTTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGGGCCGTGGTGCTCGTCGCGGGAGAGCCCGGCGTCGGCAAGTCCACGCT
GCTCCTCGACGTGGCGGCCAAGTCCGCGAGCGACGAGCACCGGACGCTGTACGTCACCGGTGAGGAGTCGGCCAGCCAGG
TGCGGCTGCGGGCCGACCGGATCCACGCCATCGACGACCATCTGTATCTCGCCGCCGAGACCGACCTCGCGGCGGTGCTC
GGGCACCTGGACGCCGTCAAGCCGTCGCTGCTGATCCTGGACTCCGTGCAGACCGTCGCCTCGCCCGAGATCGACGGCGC
CCCGGGCGGCATGGCGCAGGTGCGGGAGGTGGCGGGGGCTCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTGC
TGGTGGGCCACGTCACCAAGGACGGGGCCATCGCGGGCCCACGGCTGCTGGAGCACCTCGTGGACGTCGTCCTGCATTTC
GAGGGCGACCGGCATGCGCGGCTGAGGCTGGTGCGGGGGGTCAAGAACCGGTACGGGACGACCGACGAGGTCGGCTGTTT
CGAGCTGCACGACGAAGGGATCACGGGCCTCGCCGATCCCAGCGGGCTGTTCCTCACCCGGCGGGCCGAGCCGGTGCCCG
GTACCTGTCTGACCGTCACCCTGGAAGGGCGGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCTCAGATT
CCGTCGCCCCGGCGCACGACCTCGGGGCTCGAGACCTCGCGGGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGCGGGCG
CATCAGCGCGCTGGGGAAGAGGGACATCTACAGCGCGACGGTGGGCGGGGTGAAGCTCTCCGAGCCTGCCGCCGACCTCG
CCGTCGCGCTGGCGCTGGCCAGTGCGGCCAGTGACACTCCGCTGCCCAAGAACCTCGTGGCGATCGGCGAGGTCGGGCTC
GCCGGAGAGGTGAGACGGGTCACGGGGGTGCAGCGCAGGCTCTCCGAGGCGCACCGGCTGGGCTTCACGCACGCCCTGGT
ACCGGCCGATCCGGGGAAGGTCCCTGACGGCATGAAGGTCCTGGAAGTCGCGGACATGGGGGACGCCCTGCGGGTGCTTC
CCCGCTCGCGTCGCCGAGAGGCCCCACGGGAGGAGGGGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus mitis NCTC 12261

44.366

90.832

0.403
  radA Streptococcus mitis SK321

44.366

90.832

0.403