Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D1J60_RS31920 Genome accession   NZ_CP034350
Coordinates   6882488..6883168 (-) Length   226 a.a.
NCBI ID   WP_125596412.1    Uniprot ID   -
Organism   Streptomyces sp. W1SF4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6877488..6888168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J60_RS31900 (D1J60_31895) - 6877834..6878997 (+) 1164 WP_241253472.1 PAS domain-containing sensor histidine kinase -
  D1J60_RS31905 (D1J60_31900) - 6878994..6879704 (+) 711 WP_125823502.1 response regulator transcription factor -
  D1J60_RS31910 (D1J60_31905) wecB 6879930..6881084 (+) 1155 WP_125823503.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) -
  D1J60_RS31915 (D1J60_31910) - 6881097..6882443 (+) 1347 WP_125823504.1 glycosyltransferase -
  D1J60_RS31920 (D1J60_31915) vraR 6882488..6883168 (-) 681 WP_125596412.1 response regulator transcription factor Regulator
  D1J60_RS31925 (D1J60_31920) - 6883165..6884556 (-) 1392 WP_241253473.1 histidine kinase -
  D1J60_RS31935 (D1J60_31930) - 6884642..6885037 (+) 396 WP_125823505.1 hypothetical protein -
  D1J60_RS31940 (D1J60_31935) - 6884991..6886241 (-) 1251 WP_125823506.1 trypsin-like peptidase domain-containing protein -
  D1J60_RS31945 (D1J60_31940) - 6886288..6887868 (-) 1581 WP_125823507.1 FAD-binding oxidoreductase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24372.21 Da        Isoelectric Point: 6.1214

>NTDB_id=289043 D1J60_RS31920 WP_125596412.1 6882488..6883168(-) (vraR) [Streptomyces sp. W1SF4]
MTIRVIIVDDQAMVRAGFAALLSAQADIDVVGEAADGRQGIRVSRTVHPDVVLMDVRMPELDGLSAARELLDPPPGVTHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVRQRPAPRRDPALRLNGL
TPRETEVLELIARGLSNQEIAAHLVLAEQTVKTHIGRVLGKLDLRDRAQAVIFAYEAGLVRPGDAA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=289043 D1J60_RS31920 WP_125596412.1 6882488..6883168(-) (vraR) [Streptomyces sp. W1SF4]
TTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTCCGGGCGGGGTTCGCCGCGCTGTTGTCGGCGCAGGCCGA
CATCGACGTGGTGGGCGAGGCCGCCGACGGCCGCCAGGGGATCCGGGTCTCGCGCACGGTGCACCCCGACGTCGTGCTGA
TGGACGTACGGATGCCGGAACTGGACGGGCTCTCCGCGGCCCGCGAGCTGCTGGACCCGCCGCCGGGGGTGACGCACCGG
CCGAAGGTGCTGATGCTGACCACCTTCGACATCGACGACTACGTGTACGAGGCGCTGCGCGCGGGCGCGTCCGGGTTCCT
GCTGAAGGACGCCCCGCCGGCGGACCTGATCGCGGCGGTCCGGGTGGTCGCCTCGGGCGAGGCGCTGCTCGCGCCGTCGG
TGACGCGCCGGCTGATCGCGGACTTCGTCCGGCAGCGGCCGGCCCCGCGCAGGGATCCGGCGCTGCGGCTGAACGGGCTG
ACGCCGCGCGAGACGGAGGTGCTGGAACTGATCGCGCGGGGGTTGTCGAACCAGGAGATCGCCGCGCACCTGGTCCTGGC
GGAGCAGACGGTGAAGACGCACATCGGCCGGGTCCTGGGGAAGCTGGACCTCCGCGACCGGGCCCAGGCGGTGATCTTCG
CGTACGAGGCGGGCCTGGTCCGCCCGGGCGACGCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.629

97.788

0.407
  degU Bacillus subtilis subsp. subtilis str. 168

37.885

100

0.381

Multiple sequence alignment