Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   D1J60_RS26620 Genome accession   NZ_CP034350
Coordinates   5667961..5668752 (-) Length   263 a.a.
NCBI ID   WP_125602045.1    Uniprot ID   A0ABT7H4S3
Organism   Streptomyces sp. W1SF4     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5662961..5673752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J60_RS26605 (D1J60_26605) - 5663144..5663815 (+) 672 WP_125822782.1 GNAT family N-acetyltransferase -
  D1J60_RS26610 (D1J60_26610) - 5663958..5665820 (+) 1863 WP_125822783.1 IucA/IucC family protein -
  D1J60_RS26615 (D1J60_26615) - 5665873..5667843 (+) 1971 WP_125602042.1 ATP-dependent DNA helicase -
  D1J60_RS26620 (D1J60_26620) dinR/lexA 5667961..5668752 (-) 792 WP_125602045.1 transcriptional repressor LexA Regulator
  D1J60_RS26625 (D1J60_26625) nrdR 5669308..5669823 (+) 516 WP_125602048.1 transcriptional regulator NrdR -
  D1J60_RS26630 (D1J60_26630) - 5669961..5672852 (+) 2892 WP_125822784.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28524.24 Da        Isoelectric Point: 7.4240

>NTDB_id=289027 D1J60_RS26620 WP_125602045.1 5667961..5668752(-) (dinR/lexA) [Streptomyces sp. W1SF4]
MTTTADSATITAQNRSQSRLEPVHAMNDASQNQEAEAVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=289027 D1J60_RS26620 WP_125602045.1 5667961..5668752(-) (dinR/lexA) [Streptomyces sp. W1SF4]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGCAAGTCAGAACCAGGAGGCGGAGGCCGTACGCCCCGCGCGCTCCCTGCCAGGGCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGACTCACGGACCGGCAGCGGAGGGTGATCGAGGTCATCCGGGACTCCGTGCAGCGCCGCGGCTACCCGCCG
TCGATGCGCGAGATCGGCCAGGCGGTCGGCCTCTCCAGCACCTCCTCCGTGGCCCACCAGCTGATGGCCCTGGAGCGCAA
GGGCTTCCTGCGTCGCGACCCGCACCGGCCCCGCGCCTACGAGGTGCGCGGCTCGGACCAGCCCAGCTCGCAGCCCACGG
ACACCACCGGCAAGCCCGCCGCCTCCTACGTCCCCCTGGTCGGCCGCATCGCGGCCGGCGGCCCGATCCTGGCCGAGGAA
TCCGTCGAGGACGTGTTCCCCCTCCCCCGCCAGCTCGTCGGCGACGGTGAACTGTTCGTCCTCAAGGTCGTCGGCGACTC
GATGATCGAGGCCGCGATCTGCGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCG
CCGCCATGCTGGACGGCGAGGCCACCGTCAAGCGCTTCAAGCGGGAGGACGGCCACGTGTGGCTGCTCCCGCACAACGCC
GCCTACCAGCCGATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTCGCCGTGCTGCGACGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376

Multiple sequence alignment