Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   DBK22_RS17005 Genome accession   NZ_CP028961
Coordinates   3438406..3438804 (-) Length   132 a.a.
NCBI ID   WP_060563061.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102752     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3433406..3443804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS16980 (DBK22_03412) - 3433577..3434779 (+) 1203 WP_012116765.1 GTP-binding protein -
  DBK22_RS16985 (DBK22_03413) - 3434844..3435980 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  DBK22_RS16990 (DBK22_03414) - 3435995..3436429 (+) 435 WP_007409358.1 RDD family protein -
  DBK22_RS16995 (DBK22_03415) - 3436547..3436825 (+) 279 WP_372691166.1 YckD family protein -
  DBK22_RS17000 (DBK22_03416) - 3436929..3438365 (+) 1437 WP_098080961.1 glycoside hydrolase family 1 protein -
  DBK22_RS17005 (DBK22_03417) nin/comJ 3438406..3438804 (-) 399 WP_060563061.1 competence protein ComJ Regulator
  DBK22_RS17010 (DBK22_03418) nucA/comI 3438825..3439262 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DBK22_RS17015 (DBK22_03419) hxlB 3439619..3440176 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  DBK22_RS17020 (DBK22_03420) hxlA 3440173..3440808 (-) 636 WP_012116769.1 3-hexulose-6-phosphate synthase -
  DBK22_RS17025 (DBK22_03421) - 3441040..3441402 (+) 363 WP_012116770.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14894.84 Da        Isoelectric Point: 4.7846

>NTDB_id=289024 DBK22_RS17005 WP_060563061.1 3438406..3438804(-) (nin/comJ) [Bacillus velezensis strain SRCM102752]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=289024 DBK22_RS17005 WP_060563061.1 3438406..3438804(-) (nin/comJ) [Bacillus velezensis strain SRCM102752]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment