Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D1J60_RS26425 Genome accession   NZ_CP034350
Coordinates   5620856..5621518 (-) Length   220 a.a.
NCBI ID   WP_125822761.1    Uniprot ID   -
Organism   Streptomyces sp. W1SF4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5615856..5626518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J60_RS26395 (D1J60_26395) - 5615985..5617016 (-) 1032 WP_164720974.1 hypothetical protein -
  D1J60_RS26400 (D1J60_26400) - 5617098..5617292 (+) 195 WP_125605242.1 DUF3046 domain-containing protein -
  D1J60_RS26405 (D1J60_26405) - 5617659..5618750 (+) 1092 WP_241253607.1 AI-2E family transporter -
  D1J60_RS26410 (D1J60_26410) - 5618704..5619459 (-) 756 WP_125822759.1 Clp protease N-terminal domain-containing protein -
  D1J60_RS26415 (D1J60_26415) - 5619571..5620143 (+) 573 WP_125822760.1 HPP family protein -
  D1J60_RS26420 (D1J60_26420) - 5620214..5620639 (-) 426 WP_125604784.1 hypothetical protein -
  D1J60_RS26425 (D1J60_26425) vraR 5620856..5621518 (-) 663 WP_125822761.1 response regulator transcription factor Regulator
  D1J60_RS26430 (D1J60_26430) - 5621515..5622690 (-) 1176 WP_125822762.1 sensor histidine kinase -
  D1J60_RS26435 (D1J60_26435) - 5622899..5623816 (+) 918 WP_206436573.1 ATP-binding cassette domain-containing protein -
  D1J60_RS26440 (D1J60_26440) - 5623816..5624640 (+) 825 WP_125822764.1 ABC transporter permease -
  D1J60_RS26445 (D1J60_26445) - 5624767..5625591 (+) 825 WP_125604786.1 serine protease -
  D1J60_RS26450 (D1J60_26450) - 5625645..5626196 (-) 552 WP_125822765.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23648.27 Da        Isoelectric Point: 4.6630

>NTDB_id=289024 D1J60_RS26425 WP_125822761.1 5620856..5621518(-) (vraR) [Streptomyces sp. W1SF4]
MTVRILLADDQPLVRSGLRVLMADQPDLEVVGEAATGAEAVRLVKDVDPDVVVMDIRMPGMDGIEATRLITADRATTRVL
VLTTFDEDDNVYGALRAGASGFMVKDMALDDILAAVRVVAAGDALIAPGVTRRLIADFVGRPEAVPERSARPVEGITERE
REVLALVGHGRSNTEIAEDLFITVATAKSHVSRLLTKLGARDRVQLVITAYETGLITPPR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=289024 D1J60_RS26425 WP_125822761.1 5620856..5621518(-) (vraR) [Streptomyces sp. W1SF4]
GTGACCGTCCGGATCCTGCTCGCCGACGACCAGCCGCTGGTACGGTCCGGGCTGCGCGTACTCATGGCCGACCAGCCCGA
CTTGGAGGTGGTCGGTGAAGCCGCTACCGGTGCCGAGGCGGTCCGCCTGGTCAAGGACGTCGACCCGGACGTCGTGGTGA
TGGACATCCGGATGCCCGGCATGGACGGGATCGAGGCAACCCGACTGATCACAGCCGACCGGGCGACGACGCGGGTGCTC
GTCCTGACCACCTTCGACGAGGACGACAACGTCTACGGCGCACTCCGGGCCGGCGCGAGCGGCTTCATGGTCAAGGACAT
GGCTCTGGACGACATCCTCGCGGCGGTCCGTGTGGTCGCCGCCGGTGACGCACTGATCGCGCCGGGCGTGACGCGCCGTC
TGATCGCCGACTTCGTCGGGCGCCCCGAAGCGGTCCCGGAGCGCTCTGCACGGCCGGTCGAGGGCATCACCGAACGGGAA
CGGGAAGTGCTGGCCCTGGTCGGACACGGCCGGTCGAACACCGAGATCGCGGAGGACCTCTTCATCACCGTGGCCACCGC
CAAGTCGCACGTGTCACGGCTGCTCACCAAGCTGGGTGCCCGGGACCGGGTCCAGCTCGTCATCACCGCCTACGAGACGG
GGCTCATCACGCCGCCTCGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.741

98.182

0.4
  degU Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.391

Multiple sequence alignment