Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   DBK22_RS13330 Genome accession   NZ_CP028961
Coordinates   2698868..2698987 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102752     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 2693868..2703987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS13310 - 2694220..2694730 (+) 511 Protein_2642 bacteriocin biosynthesis protein AlbG -
  DBK22_RS13315 (DBK22_02680) - 2694737..2696113 (-) 1377 WP_160242383.1 YncE family protein -
  DBK22_RS13320 (DBK22_02681) - 2696153..2697508 (-) 1356 WP_160242384.1 YncE family protein -
  DBK22_RS13325 (DBK22_02682) rapF 2697739..2698884 (+) 1146 WP_160242385.1 tetratricopeptide repeat protein Regulator
  DBK22_RS13330 (DBK22_02683) phrF 2698868..2698987 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  DBK22_RS13335 (DBK22_02684) - 2699185..2699388 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  DBK22_RS13340 (DBK22_02685) - 2699402..2699605 (+) 204 WP_007407641.1 hypothetical protein -
  DBK22_RS13345 (DBK22_02686) - 2699640..2699825 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  DBK22_RS13350 (DBK22_02687) - 2700011..2700292 (+) 282 WP_007407643.1 hypothetical protein -
  DBK22_RS13355 (DBK22_02688) - 2700336..2700848 (+) 513 WP_031304384.1 stage II sporulation protein M -
  DBK22_RS13365 (DBK22_02690) - 2701439..2701657 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  DBK22_RS13370 (DBK22_02691) speB 2701825..2702697 (-) 873 WP_072589674.1 agmatinase -
  DBK22_RS13375 (DBK22_02692) speE 2702756..2703586 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=289014 DBK22_RS13330 WP_015240778.1 2698868..2698987(+) (phrF) [Bacillus velezensis strain SRCM102752]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=289014 DBK22_RS13330 WP_015240778.1 2698868..2698987(+) (phrF) [Bacillus velezensis strain SRCM102752]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment