Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DBK22_RS12410 Genome accession   NZ_CP028961
Coordinates   2511389..2512078 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SRCM102752     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2506389..2517078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS12375 (DBK22_02490) - 2506586..2507068 (-) 483 WP_160242345.1 flagellar protein FlgN -
  DBK22_RS12380 (DBK22_02491) flgM 2507083..2507349 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DBK22_RS12385 (DBK22_02492) - 2507419..2507838 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  DBK22_RS12390 (DBK22_02493) comFC 2507912..2508601 (-) 690 WP_201756968.1 phosphoribosyltransferase family protein Machinery gene
  DBK22_RS12395 (DBK22_02494) - 2508607..2508891 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  DBK22_RS12400 (DBK22_02495) comFA 2508949..2510334 (-) 1386 WP_160242346.1 DEAD/DEAH box helicase Machinery gene
  DBK22_RS12405 (DBK22_02496) - 2510443..2511291 (-) 849 WP_003151387.1 DegV family protein -
  DBK22_RS12410 (DBK22_02497) degU 2511389..2512078 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DBK22_RS12415 (DBK22_02498) degS 2512155..2513318 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  DBK22_RS12420 (DBK22_02499) - 2513541..2514188 (+) 648 WP_007407485.1 YigZ family protein -
  DBK22_RS12425 (DBK22_02500) - 2514193..2515413 (+) 1221 WP_061581227.1 LCP family protein -
  DBK22_RS12430 (DBK22_02501) - 2515512..2516588 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=289008 DBK22_RS12410 WP_003219701.1 2511389..2512078(-) (degU) [Bacillus velezensis strain SRCM102752]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=289008 DBK22_RS12410 WP_003219701.1 2511389..2512078(-) (degU) [Bacillus velezensis strain SRCM102752]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment