Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   DBK22_RS12400 Genome accession   NZ_CP028961
Coordinates   2508949..2510334 (-) Length   461 a.a.
NCBI ID   WP_160242346.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102752     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2503949..2515334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS12365 (DBK22_02488) flgL 2504124..2505041 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  DBK22_RS12370 (DBK22_02489) flgK 2505053..2506570 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  DBK22_RS12375 (DBK22_02490) - 2506586..2507068 (-) 483 WP_160242345.1 flagellar protein FlgN -
  DBK22_RS12380 (DBK22_02491) flgM 2507083..2507349 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DBK22_RS12385 (DBK22_02492) - 2507419..2507838 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  DBK22_RS12390 (DBK22_02493) comFC 2507912..2508601 (-) 690 WP_201756968.1 phosphoribosyltransferase family protein Machinery gene
  DBK22_RS12395 (DBK22_02494) - 2508607..2508891 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  DBK22_RS12400 (DBK22_02495) comFA 2508949..2510334 (-) 1386 WP_160242346.1 DEAD/DEAH box helicase Machinery gene
  DBK22_RS12405 (DBK22_02496) - 2510443..2511291 (-) 849 WP_003151387.1 DegV family protein -
  DBK22_RS12410 (DBK22_02497) degU 2511389..2512078 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DBK22_RS12415 (DBK22_02498) degS 2512155..2513318 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  DBK22_RS12420 (DBK22_02499) - 2513541..2514188 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52605.92 Da        Isoelectric Point: 10.2276

>NTDB_id=289007 DBK22_RS12400 WP_160242346.1 2508949..2510334(-) (comFA) [Bacillus velezensis strain SRCM102752]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITDEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLSEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITSGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=289007 DBK22_RS12400 WP_160242346.1 2508949..2510334(-) (comFA) [Bacillus velezensis strain SRCM102752]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTACGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGACGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCTCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTCCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACAGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATCACAAGCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62

Multiple sequence alignment