Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D1J60_RS16335 Genome accession   NZ_CP034350
Coordinates   3532038..3532637 (-) Length   199 a.a.
NCBI ID   WP_125598056.1    Uniprot ID   -
Organism   Streptomyces sp. W1SF4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3527038..3537637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J60_RS16315 (D1J60_16315) - 3527908..3528474 (-) 567 WP_125824056.1 SigE family RNA polymerase sigma factor -
  D1J60_RS16320 (D1J60_16320) - 3528893..3529969 (-) 1077 WP_125821589.1 aspartate-semialdehyde dehydrogenase -
  D1J60_RS16325 (D1J60_16325) - 3529966..3531240 (-) 1275 WP_125821590.1 aspartate kinase -
  D1J60_RS16330 (D1J60_16330) - 3531371..3532045 (-) 675 WP_125598060.1 DUF5063 domain-containing protein -
  D1J60_RS16335 (D1J60_16335) recR 3532038..3532637 (-) 600 WP_125598056.1 recombination mediator RecR Machinery gene
  D1J60_RS16340 (D1J60_16340) - 3532722..3533066 (-) 345 WP_125598053.1 YbaB/EbfC family nucleoid-associated protein -
  D1J60_RS16345 (D1J60_16345) - 3533341..3534066 (+) 726 WP_125598050.1 SLATT domain-containing protein -
  D1J60_RS16350 (D1J60_16350) - 3534205..3534855 (-) 651 WP_125598047.1 hypothetical protein -
  D1J60_RS16355 (D1J60_16355) - 3534956..3535627 (-) 672 WP_125821591.1 GntR family transcriptional regulator -
  D1J60_RS16360 (D1J60_16360) - 3535741..3537093 (-) 1353 WP_125821592.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21664.09 Da        Isoelectric Point: 5.1616

>NTDB_id=288998 D1J60_RS16335 WP_125598056.1 3532038..3532637(-) (recR) [Streptomyces sp. W1SF4]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKAKVRFCAVCGNVAQEELCGICRDPRRDPAV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=288998 D1J60_RS16335 WP_125598056.1 3532038..3532637(-) (recR) [Streptomyces sp. W1SF4]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGGCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCTGTGCGGGATCTGCCGTGACCCGCGCCGCGATCCGGCGGTC
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCAAGTACCACGTCCTCGG
CGGGGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGGATCCGCGAACTGCTCGCGCGGCTGGCGGACGGCG
CGGTCACCGAGCTGATCCTGGCGACCGACCCGAACCTGGAGGGCGAGGCCACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGACCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTTGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462