Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   D1J60_RS11690 Genome accession   NZ_CP034350
Coordinates   2497303..2499036 (+) Length   577 a.a.
NCBI ID   WP_125596880.1    Uniprot ID   -
Organism   Streptomyces sp. W1SF4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2492303..2504036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J60_RS11655 (D1J60_11655) - 2493161..2494147 (-) 987 WP_125821056.1 LuxR C-terminal-related transcriptional regulator -
  D1J60_RS11660 (D1J60_11660) - 2494455..2494673 (+) 219 WP_125821057.1 hypothetical protein -
  D1J60_RS11680 (D1J60_11680) - 2495397..2495696 (+) 300 WP_125596886.1 YtxH domain-containing protein -
  D1J60_RS11685 (D1J60_11685) - 2495737..2497182 (+) 1446 WP_125821058.1 FGGY family carbohydrate kinase -
  D1J60_RS11690 (D1J60_11690) rcrP 2497303..2499036 (+) 1734 WP_125596880.1 ABC transporter ATP-binding protein Regulator
  D1J60_RS11695 (D1J60_11695) rcrQ 2499033..2500955 (+) 1923 WP_125596877.1 ABC transporter ATP-binding protein Regulator
  D1J60_RS11700 (D1J60_11700) - 2501025..2502170 (-) 1146 WP_241253230.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62555.62 Da        Isoelectric Point: 5.2917

>NTDB_id=288981 D1J60_RS11690 WP_125596880.1 2497303..2499036(+) (rcrP) [Streptomyces sp. W1SF4]
MLIRLLRTHLGPYKKAIAALVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAALGRDVRASVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVKLSGV
LLAVVPVLGVSVGAIVWKTRPLFRLMQERLDVVNRVLREQITGNRVIRAFVRDGYEEERFRRANSELTAVSLASGKLLAL
MFPVVILVVNISSVAVIWFGAMRVDGGGMEIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PVDPVRTLSRRGQLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGDVLVDGEDVR
RIDPELLARTVGMVPQKPYLFSGTVASNLRYGRPDATDEELWRALEVAQAKDFVSELEGGLEAPVTQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGRVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=288981 D1J60_RS11690 WP_125596880.1 2497303..2499036(+) (rcrP) [Streptomyces sp. W1SF4]
GTGCTCATACGACTGCTGCGGACCCACCTGGGTCCGTACAAGAAAGCCATCGCCGCACTGGTGCTGCTGCAACTCCTGCA
GACCAGTGCGAGCCTCTACCTGCCCACCCTCAACGCGGACATCATCGACAACGGTGTCGTCAACGGGGACACCGGCTACA
TCCTGCGCTTCGGCGCGCTGATGCTCGGGGTCTCCCTCGTCCAGCTCGTCTGCAACGTCGGGGCCGTCTACTACGGGGCG
CGCACGGCGGCCGCGCTCGGCCGCGACGTGCGCGCCTCCGTCTTCGACCGGGTGCAGAGCTTCTCGGCGCGGGAGCTGGG
CCAGTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACCTTCA
CCCTGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCGCTCGACGTGAAGCTGTCGGGCGTG
CTGCTCGCGGTGGTGCCCGTGCTGGGCGTGTCGGTCGGCGCGATCGTCTGGAAGACGCGACCGCTGTTCCGCCTGATGCA
GGAACGCCTCGACGTCGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGCGACG
GCTACGAGGAGGAGCGCTTCCGCCGGGCGAACTCCGAGCTGACCGCGGTCTCGCTGGCCTCCGGCAAGCTGCTCGCGCTG
ATGTTCCCGGTCGTCATCCTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGTGCGATGCGGGTGGACGGGGG
CGGCATGGAGATCGGTCAGCTGACCGCCTTCCTCGCCTACCTGATGCAGATCGTCATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTCCCG
CCCGTCGACCCGGTGCGTACGCTCTCCCGGCGCGGGCAGCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGCCCCGGCGAGACCACCGCGGTGATCGGTTCCACCGGCAGCGGCA
AGTCGACGCTGCTGGGCCTGGTGCCCCGGCTGTTCGACGCGACCGGCGGTGACGTGCTGGTCGACGGGGAGGACGTACGC
CGGATCGACCCGGAGCTGCTGGCGCGGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCCTC
CAACCTGCGCTACGGGCGCCCGGACGCGACCGACGAGGAGCTGTGGCGGGCCCTGGAGGTGGCCCAGGCCAAGGACTTCG
TGTCCGAGCTGGAGGGCGGTCTGGAGGCGCCGGTCACCCAGGGCGGGACGAACGTCTCCGGCGGCCAGCGCCAGCGTCTG
GCCATCGCCCGCACGCTCGTGCAGCGCCCGGAGATCTACCTGTTCGACGATTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGGGAGACCGAGGACGCGACGGTCGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTGGTGGGCGAGGGCCGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.078

93.241

0.383

Multiple sequence alignment