Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D1J60_RS08555 Genome accession   NZ_CP034350
Coordinates   1816103..1816762 (-) Length   219 a.a.
NCBI ID   WP_007263346.1    Uniprot ID   -
Organism   Streptomyces sp. W1SF4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1811103..1821762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J60_RS08525 (D1J60_08525) - 1811491..1812261 (-) 771 WP_125601081.1 sulfite exporter TauE/SafE family protein -
  D1J60_RS08530 (D1J60_08530) - 1812357..1813331 (-) 975 WP_125601060.1 SPFH domain-containing protein -
  D1J60_RS08535 (D1J60_08535) - 1813416..1813844 (-) 429 WP_125601062.1 NfeD family protein -
  D1J60_RS08540 (D1J60_08540) - 1813910..1814710 (-) 801 WP_125601065.1 ABC transporter ATP-binding protein -
  D1J60_RS08545 (D1J60_08545) - 1814846..1815619 (+) 774 WP_125820701.1 hypothetical protein -
  D1J60_RS08550 (D1J60_08550) - 1815696..1815941 (-) 246 WP_042803098.1 chaplin -
  D1J60_RS08555 (D1J60_08555) vraR 1816103..1816762 (-) 660 WP_007263346.1 response regulator transcription factor Regulator
  D1J60_RS08560 (D1J60_08560) - 1816755..1817891 (-) 1137 WP_125601071.1 GAF domain-containing sensor histidine kinase -
  D1J60_RS08565 (D1J60_08565) - 1818364..1819002 (+) 639 WP_125820702.1 transglycosylase SLT domain-containing protein -
  D1J60_RS08570 (D1J60_08570) - 1819101..1821605 (-) 2505 WP_125820703.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23759.03 Da        Isoelectric Point: 5.1790

>NTDB_id=288974 D1J60_RS08555 WP_007263346.1 1816103..1816762(-) (vraR) [Streptomyces sp. W1SF4]
MADTPGRGRIRVLLVDDHQVVRRGLRTFLEVQEDIEVVGEAADGAEGTARAEELRPDVILMDVKMPGTDGIEALRRLRDL
ENPARVLIVTSFTEQRTVVPALRAGAAGYLYKDIDPDALAGAIRSVHAGHVLLQPEVAEALLAAQDDQSGPGGRPGSLTD
REREVLGLIADGRSNREIARTLVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGIAE

Nucleotide


Download         Length: 660 bp        

>NTDB_id=288974 D1J60_RS08555 WP_007263346.1 1816103..1816762(-) (vraR) [Streptomyces sp. W1SF4]
GTGGCTGACACCCCCGGCCGCGGCCGGATCCGCGTCCTGCTCGTCGACGACCACCAGGTGGTCCGCCGCGGCCTGCGCAC
CTTCCTGGAGGTACAGGAGGACATCGAGGTGGTCGGAGAGGCCGCCGACGGGGCGGAGGGCACCGCCCGCGCCGAGGAAC
TGCGGCCCGACGTGATCCTCATGGACGTCAAGATGCCCGGCACCGACGGCATCGAGGCCCTGCGGCGGCTGCGCGACCTG
GAGAACCCGGCCCGGGTCCTGATCGTCACCAGCTTCACCGAACAGCGGACCGTCGTCCCCGCACTGCGGGCCGGCGCCGC
CGGATACCTCTACAAGGACATCGACCCCGACGCCCTGGCCGGAGCCATCCGCTCCGTGCACGCGGGACACGTCCTGCTCC
AGCCGGAGGTCGCCGAGGCCCTGCTGGCCGCCCAGGACGACCAGAGCGGCCCCGGCGGCCGCCCCGGCTCGCTGACCGAC
CGCGAACGCGAGGTCCTCGGCCTCATCGCCGACGGCCGCTCCAACCGGGAGATCGCCAGGACGCTCGTGCTGTCCGAGAA
GACGGTCAAGACGCACGTCTCGAACATCCTGATGAAGCTGGACCTCTCCGACCGCACCCAGGCCGCGCTGTGGGCCGTAC
GGCACGGCATCGCGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.286

95.89

0.425
  degU Bacillus subtilis subsp. subtilis str. 168

38.667

100

0.397

Multiple sequence alignment