Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D1J60_RS05865 Genome accession   NZ_CP034350
Coordinates   1241665..1242315 (+) Length   216 a.a.
NCBI ID   WP_125596758.1    Uniprot ID   -
Organism   Streptomyces sp. W1SF4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1236665..1247315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J60_RS05840 (D1J60_05840) mug 1237652..1238197 (+) 546 WP_125596743.1 G/U mismatch-specific DNA glycosylase -
  D1J60_RS05845 (D1J60_05845) - 1238211..1238648 (-) 438 WP_125820398.1 hypothetical protein -
  D1J60_RS05850 (D1J60_05850) - 1238689..1239441 (-) 753 WP_241253166.1 ABC transporter permease -
  D1J60_RS05855 (D1J60_05855) - 1239462..1240376 (-) 915 WP_125820400.1 ATP-binding cassette domain-containing protein -
  D1J60_RS05860 (D1J60_05860) - 1240485..1241660 (+) 1176 WP_125820401.1 histidine kinase -
  D1J60_RS05865 (D1J60_05865) vraR 1241665..1242315 (+) 651 WP_125596758.1 response regulator transcription factor Regulator
  D1J60_RS05870 (D1J60_05870) - 1242416..1243570 (+) 1155 WP_125596761.1 ROK family transcriptional regulator -
  D1J60_RS05875 (D1J60_05875) - 1243643..1244395 (-) 753 WP_125820402.1 GntR family transcriptional regulator -
  D1J60_RS05880 (D1J60_05880) - 1244730..1245608 (+) 879 WP_125820403.1 alpha/beta fold hydrolase -
  D1J60_RS05885 (D1J60_05885) - 1245717..1247306 (+) 1590 WP_125823891.1 alkaline phosphatase D family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23238.86 Da        Isoelectric Point: 4.8664

>NTDB_id=288969 D1J60_RS05865 WP_125596758.1 1241665..1242315(+) (vraR) [Streptomyces sp. W1SF4]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGASVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRSVDSPPKI
LVVTTFENDEYVYQALRAGADGFLLKRARPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNREARAVLERAALTEREEAV
LRLMARGLTNVEIARELIVGTETVKSHVSAVLGKLGARDRTQAVIAAYESGFVSPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=288969 D1J60_RS05865 WP_125596758.1 1241665..1242315(+) (vraR) [Streptomyces sp. W1SF4]
ATGCCGGTTACCGTACTGCTCGTCGACGACGAGCCCCTGGTGCGCGCGGGTCTGCGCGCCGTCCTGGAGGCCCAGCCCGA
CATCGAGGTGGTGGGCGAGGCCGCCGACGGGGCGTCGGTCATCCCCCTGGTGCGGCAGTTGCGGCCGGACGTGGTGGCGA
TGGACGTACGGATGCCGCTGCTCGACGGGATCGAGGCGACCAGGGCGGTCCTGCGGTCGGTGGACTCCCCGCCGAAGATC
CTCGTGGTCACCACCTTCGAGAACGACGAGTACGTCTACCAGGCGCTGCGCGCCGGAGCCGACGGCTTCCTGCTGAAGCG
GGCCCGCCCCTCGGAGATCGTGCACGCGGTACGGCTCGTGGCCGAGGGCGAGACCCTGCTCTTCCCCGCGGCCGTACGGG
CCCTCGCCGCCGAGTACGGGAACCGGGAGGCCCGTGCGGTCCTGGAGCGGGCCGCGCTGACGGAGCGGGAGGAGGCGGTG
CTGCGGCTCATGGCCCGGGGGCTGACCAACGTGGAGATCGCGCGGGAGCTGATCGTCGGGACGGAGACCGTGAAGTCCCA
TGTGAGCGCGGTCCTGGGCAAGCTGGGGGCGCGCGACCGGACCCAGGCGGTGATCGCGGCGTACGAGTCGGGCTTCGTCT
CGCCGGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.654

99.074

0.403
  degU Bacillus subtilis subsp. subtilis str. 168

34.821

100

0.361