Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | E2348C_RS05950 | Genome accession | NC_011601 |
| Coordinates | 1177586..1178062 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli O127:H6 str. E2348/69 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1172586..1183062
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E2348C_RS05925 (E2348_C_1111) | - | 1173864..1174769 (+) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
| E2348C_RS05930 (E2348_C_1112) | - | 1174766..1175836 (+) | 1071 | WP_000102671.1 | patatin-like phospholipase family protein | - |
| E2348C_RS05940 (E2348_C_1114) | - | 1176176..1176994 (+) | 819 | WP_001234664.1 | DUF932 domain-containing protein | - |
| E2348C_RS05945 (E2348_C_1115) | - | 1177085..1177570 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| E2348C_RS05950 (E2348_C_1116) | radC | 1177586..1178062 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| E2348C_RS05955 (E2348_C_1117) | yeeT | 1178125..1178346 (+) | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| E2348C_RS05965 (E2348_C_1118) | - | 1178509..1178883 (+) | 375 | WP_001280955.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| E2348C_RS05970 (E2348_C_1119) | - | 1178930..1179304 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| E2348C_RS05975 (E2348_C_1120) | - | 1179301..1179792 (+) | 492 | WP_000976857.1 | DUF5983 family protein | - |
| E2348C_RS05980 (E2348_C_1121) | - | 1179804..1180001 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| E2348C_RS05985 (E2348_C_1122) | - | 1180086..1180928 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| E2348C_RS05995 (E2348_C_1123) | ghrA | 1181398..1182336 (+) | 939 | WP_000351277.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=28877 E2348C_RS05950 WP_001186738.1 1177586..1178062(+) (radC) [Escherichia coli O127:H6 str. E2348/69]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=28877 E2348C_RS05950 WP_001186738.1 1177586..1178062(+) (radC) [Escherichia coli O127:H6 str. E2348/69]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |