Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D8X56_RS04135 Genome accession   NZ_CP034314
Coordinates   858902..860422 (-) Length   506 a.a.
NCBI ID   WP_125302398.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP42K     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 853902..865422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8X56_RS04125 (D8X56_04125) - 855473..856777 (-) 1305 WP_125302393.1 restriction endonuclease subunit S -
  D8X56_RS04130 (D8X56_04130) - 856817..858877 (-) 2061 WP_125302396.1 heavy metal translocating P-type ATPase -
  D8X56_RS04135 (D8X56_04135) comM 858902..860422 (-) 1521 WP_125302398.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D8X56_RS04140 (D8X56_04140) def 860428..860952 (-) 525 WP_125302401.1 peptide deformylase -
  D8X56_RS04145 (D8X56_04145) clpP 860957..861544 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D8X56_RS04150 (D8X56_04150) tig 861565..862920 (-) 1356 WP_125302403.1 trigger factor -
  D8X56_RS04155 (D8X56_04155) - 863032..863865 (-) 834 WP_125302405.1 outer membrane protein -
  D8X56_RS04160 (D8X56_04160) hpaA 863894..864676 (-) 783 WP_125302408.1 flagellar sheath lipoprotein HpaA -
  D8X56_RS04165 (D8X56_04165) moaC 864795..865271 (-) 477 WP_001131542.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57146.10 Da        Isoelectric Point: 8.3894

>NTDB_id=288763 D8X56_RS04135 WP_125302398.1 858902..860422(-) (comM) [Helicobacter pylori strain HP42K]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPETKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=288763 D8X56_RS04135 WP_125302398.1 858902..860422(-) (comM) [Helicobacter pylori strain HP42K]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGGTTGGCTAATAATTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCTCCTTTAAAAATCACCATCAACCTTTCTCCCTCAGATTTGCCTAAATCCGGGAGTCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCTATTAAGCGCCCCCATGCCAAAA
TCATTGCACCTAAGGCGAATGAAGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCTTTAGAAATTTTGCAAAACCCTGAAACCAAAGCAGACACCCACACCAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAATTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTAAATGAAATCTTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCGACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTGTTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAGAGATTTTGCCCTTTAAACGCTGAAG
CACAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTGAATAAGGTCAAAAAGGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.826

100

0.978
  comM Acinetobacter baylyi ADP1

36.399

100

0.368
  comM Legionella pneumophila str. Paris

36.382

99.407

0.362
  comM Legionella pneumophila strain ERS1305867

36.382

99.407

0.362

Multiple sequence alignment