Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   DBX26_RS12280 Genome accession   NZ_CP028943
Coordinates   2670070..2670684 (+) Length   204 a.a.
NCBI ID   WP_020333941.1    Uniprot ID   A0AAN0Y4A1
Organism   Vibrio sp. dhg     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2665070..2675684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS12260 (DBX26_12250) - 2665299..2666210 (-) 912 WP_014232939.1 ABC transporter ATP-binding protein -
  DBX26_RS12265 (DBX26_12255) - 2666516..2668186 (-) 1671 WP_014232940.1 SulP family inorganic anion transporter -
  DBX26_RS12270 (DBX26_12260) can 2668465..2669133 (+) 669 WP_014232941.1 carbonate dehydratase -
  DBX26_RS12275 (DBX26_12265) hpt 2669222..2669752 (-) 531 WP_014232942.1 hypoxanthine phosphoribosyltransferase -
  DBX26_RS12280 (DBX26_12270) opaR 2670070..2670684 (+) 615 WP_020333941.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  DBX26_RS12285 (DBX26_12275) lpdA 2670809..2672236 (-) 1428 WP_014232944.1 dihydrolipoyl dehydrogenase -
  DBX26_RS12290 (DBX26_12280) aceF 2672503..2674380 (-) 1878 WP_118119342.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23655.95 Da        Isoelectric Point: 6.3780

>NTDB_id=288734 DBX26_RS12280 WP_020333941.1 2670070..2670684(+) (opaR) [Vibrio sp. dhg]
MDSIAKRARTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARDNIANITSAMIELVNQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEICNTHQPE
HLTNLFHGICYSLFVQANRFKGEDELKNLVSSYLDMLCIYDRNQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=288734 DBX26_RS12280 WP_020333941.1 2670070..2670684(+) (opaR) [Vibrio sp. dhg]
ATGGACTCAATTGCAAAGAGAGCCCGTACTAGGCTTTCCCCTATTAAGCGTAAACAACAACTCATGGAAATCGCGTTGGA
AGTATTTGCGCGTCGCGGTATTGGCCGCGGTGGTCATGCGGATATCGCTGAAATCGCGCAGGTTTCTGTTGCTACCGTTT
TTAACTACTTCCCAACTCGTGAAGATCTCGTTGATGAAGTGCTGAACCACGTAGTACGTCAGTTCTCGAACTTCCTTTCA
GATAATATCGATCTAGACCTACACGCTCGTGACAATATTGCGAATATCACCAGCGCAATGATTGAGCTAGTCAATCAAGA
TTGCCACTGGCTGAAAGTATGGTTTGAGTGGAGCGCATCGACACGCGACGAAGTTTGGCCACTATTCGTGTCAACCAACC
GCACCAACCAGCTGTTGGTACAGAACATGTTTATCAAAGCAATTGAGCGTGGTGAAATCTGTAACACGCATCAACCAGAA
CATTTGACTAACTTGTTCCACGGCATTTGCTACTCACTGTTTGTACAAGCAAACCGTTTTAAGGGTGAAGATGAGCTGAA
AAATCTCGTAAGTTCATACCTTGATATGCTTTGTATTTACGATCGCAATCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.079

99.02

0.912
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696

Multiple sequence alignment