Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   DBX26_RS09805 Genome accession   NZ_CP028943
Coordinates   2135237..2136598 (-) Length   453 a.a.
NCBI ID   WP_049794667.1    Uniprot ID   -
Organism   Vibrio sp. dhg     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2130237..2141598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS09770 (DBX26_09760) moaE 2130795..2131250 (-) 456 WP_020335667.1 molybdopterin synthase catalytic subunit MoaE -
  DBX26_RS09775 (DBX26_09765) moaD 2131252..2131509 (-) 258 WP_020335669.1 molybdopterin synthase sulfur carrier subunit -
  DBX26_RS09780 (DBX26_09770) moaC 2131506..2131985 (-) 480 WP_118118973.1 cyclic pyranopterin monophosphate synthase MoaC -
  DBX26_RS09785 (DBX26_09775) moaB 2132013..2132525 (-) 513 WP_014232531.1 molybdenum cofactor biosynthesis protein B -
  DBX26_RS09790 (DBX26_09780) moaA 2132626..2133615 (-) 990 WP_014232532.1 GTP 3',8-cyclase MoaA -
  DBX26_RS09795 (DBX26_09785) - 2133922..2134812 (+) 891 WP_118118975.1 YvcK family protein -
  DBX26_RS09800 (DBX26_09790) luxU 2134896..2135240 (-) 345 WP_020335671.1 quorum-sensing phosphorelay protein LuxU -
  DBX26_RS09805 (DBX26_09795) luxO 2135237..2136598 (-) 1362 WP_049794667.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  DBX26_RS09810 (DBX26_09800) uvrB 2136929..2138959 (-) 2031 WP_014232536.1 excinuclease ABC subunit UvrB -
  DBX26_RS09820 (DBX26_09810) rsxA 2140064..2140642 (+) 579 WP_118118977.1 electron transport complex subunit RsxA -
  DBX26_RS09825 (DBX26_09815) rsxB 2140646..2141227 (+) 582 WP_118118979.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50378.40 Da        Isoelectric Point: 6.0277

>NTDB_id=288732 DBX26_RS09805 WP_049794667.1 2135237..2136598(-) (luxO) [Vibrio sp. dhg]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKQSHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVVEIAYSLLG
YMSHEEGKGFVRFSQEVIDRFNNYEWPGNVRQLQNVLRNIVVLNHGKEITLDMLPPPLNQPLERKTSSATVESQVMTASD
IVPLWITEKTAIERAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNSKDERQKV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=288732 DBX26_RS09805 WP_049794667.1 2135237..2136598(-) (luxO) [Vibrio sp. dhg]
ATGGTCGAGGATACTGCGTCGGTTGCGGCGTTGTATCGCTCTTACCTGACGCCACTAGGTATTGACATCAATATTGTCGG
TACCGGGCGTGATGCGATCGAAAGCCTGAAACATCGTATCCCCGATCTTATTCTGCTTGATCTTCGTCTGCCTGACATGA
CGGGTATGGACGTTCTGCATGCAGTGAAACAAAGTCACCCAGACGTTCCTATCATCTTTATGACTGCACACGGCTCTATT
GATACTGCGGTAGAAGCGATGCGTCATGGCTCTCAAGACTTTTTGATTAAACCGTGTGAAGCCGACCGATTACGTGTCAC
GGTGAACAATGCGATACGAAAAGCGACCAAGTTAAAAAACGAAGCGGATAATCCCGGAAACCAGAATTATCAGGGTTTCA
TCGGTAGTAGCCAAACCATGCAGCAGGTTTACCGCACCATTGACTCAGCCGCGAGCAGTAAGGCGAGTATTTTCATTACT
GGTGAAAGTGGTACGGGTAAAGAGGTGTGTGCCGAAGCTATCCATGCCGCAAGTAAACGAGGTGATAAACCATTTATTGC
GATTAACTGTGCAGCGATCCCGAAAGATCTGATTGAAAGTGAATTGTTTGGTCACGTAAAAGGCGCGTTTACTGGTGCGG
CGAATGATCGTCAAGGTGCGGCAGAATTAGCGGATGGCGGCACGCTTTTCCTTGATGAATTGTGTGAAATGGATTTGGAC
TTACAGACCAAGTTGTTGCGATTTATCCAGACTGGTACCTTCCAGAAAGTCGGCTCCTCAAAAATGAAAAGCGTGGATGT
GCGCTTTGTGTGCGCCACCAACCGTGACCCTTGGAAAGAGGTTCAGGAAGGGCGCTTTCGTGAAGACCTATATTACCGCT
TATACGTAATACCATTGCATCTTCCACCTTTGCGTGAGCGTGGCGAAGACGTTGTCGAAATTGCTTATTCTTTATTGGGT
TATATGTCTCATGAAGAGGGGAAAGGCTTTGTACGCTTTTCTCAAGAAGTGATAGATCGATTTAATAACTATGAATGGCC
CGGTAACGTACGTCAGTTACAAAACGTGCTTCGCAATATCGTGGTGTTAAATCACGGTAAAGAAATTACTTTGGATATGC
TTCCGCCTCCATTGAATCAACCTTTGGAGCGTAAGACATCAAGCGCCACAGTTGAGTCTCAAGTGATGACAGCCTCGGAC
ATTGTGCCACTGTGGATTACGGAAAAAACGGCTATTGAACGCGCAATTGAAGCGTGTGACGGTAATATTCCTCGAGCAGC
AGGGTATCTAGATGTCAGCCCATCGACGATTTACCGTAAGCTACAAGCATGGAACAGCAAGGATGAGCGGCAAAAGGTAT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

98.896

0.859

Multiple sequence alignment