Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   DBX26_RS06270 Genome accession   NZ_CP028943
Coordinates   1352884..1354305 (-) Length   473 a.a.
NCBI ID   WP_118118287.1    Uniprot ID   -
Organism   Vibrio sp. dhg     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1347884..1359305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS06245 (DBX26_06235) - 1348489..1349139 (+) 651 WP_118118286.1 thiopurine S-methyltransferase -
  DBX26_RS06250 (DBX26_06240) purT 1349233..1350408 (-) 1176 WP_014231623.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  DBX26_RS06255 (DBX26_06245) cdd 1350556..1351443 (-) 888 WP_014231624.1 cytidine deaminase -
  DBX26_RS06260 (DBX26_06250) - 1351772..1352449 (-) 678 WP_014231625.1 LrgB family protein -
  DBX26_RS06265 (DBX26_06255) - 1352451..1352825 (-) 375 WP_065302253.1 CidA/LrgA family protein -
  DBX26_RS06270 (DBX26_06260) sbcB 1352884..1354305 (-) 1422 WP_118118287.1 exodeoxyribonuclease I Machinery gene
  DBX26_RS25725 - 1354544..1354666 (+) 123 WP_301951773.1 hypothetical protein -
  DBX26_RS06275 (DBX26_06265) - 1354877..1355062 (+) 186 WP_020333097.1 hypothetical protein -
  DBX26_RS06280 (DBX26_06270) - 1355204..1356229 (+) 1026 WP_118118289.1 hypothetical protein -
  DBX26_RS06285 (DBX26_06275) - 1356563..1357015 (+) 453 WP_118118291.1 hypothetical protein -
  DBX26_RS06290 (DBX26_06280) - 1357485..1358102 (+) 618 WP_118118293.1 hypothetical protein -
  DBX26_RS06295 (DBX26_06285) - 1358292..1358765 (+) 474 WP_118118295.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54483.64 Da        Isoelectric Point: 4.8188

>NTDB_id=288728 DBX26_RS06270 WP_118118287.1 1352884..1354305(-) (sbcB) [Vibrio sp. dhg]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKAVQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLNNLALLRQHPEIREKLISLFSVERTFEKSDDVDTQLYDSFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=288728 DBX26_RS06270 WP_118118287.1 1352884..1354305(-) (sbcB) [Vibrio sp. dhg]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGAACAAACCCTGCAAAAGATCGTCCGAG
TCAATTCGCTGGTGTTCGCACAGATGAAAATTTCAATATCATCGGCGAGCCTTTAGTTATGTATTGCCAGCCACCTGCTG
ATTACCTTCCTTCTCCTGAAGCTGCTTTAATTACTGGGATTACCCCACAAAAGGCGGTGCAGGAAGGTCTGCCTGAGCCT
GAGTTCATTGCTAAAATTCATGCCGAGTTATCCAAACCCAATACCACCAGCTTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTGACGCGTTACACCTGTTACCGCAACTTTATTGACCCGTATGCGTGGAGTTGGCAGAACGGCAATTCGCGCTGGG
ATTTACTTGATGTGCTGCGCGCTTGTCATGCCCTTCGACCAGAAGGCGTTGAGTGGCCAGAAAATGAAGAAGGCTTTCCT
AGCTTCAAACTTGAGCATTTGTCTGTTGCCAACGGTATTGAACACAGCAATGCACACGATGCCATGGCTGACGTTATCGC
AACGATCGAGATGGCGAAGAAAGTTAAAGCCGCTCAGCCTAAATTGTTTGATTACTTCTTCTCCATGCGTCAAAAACGTA
AGCTGAATGAATTGGTTGATATCGTTAATATGACGCCTCTGATGCACGTTTCTGGCATGTTAGGACGTGAGTGTCAGTAC
ACAAGCTGGATTGTGCCTGTTGCATGGCATCCGACGAACAACAACGCGGTTATCACGATTGATTTAGCCAAAGATCCGCA
ACCAATCCTAGAGCTGTCTGCGGAAGAGCTGCATGAAAGGTTGTACACCAAGCGAGAAGACCTCGGTGATTTGCTGCCTG
TGCCAGTTAAACTTGTTCACTTGAACAAGTGCCCTATTCTGGCACCAGCGAAAACACTGACGGCTGAAAACGCGGAGTCT
ATCGGCATTGACCGTCAACAATGCTTGAACAATCTGGCTCTGTTGCGTCAGCACCCAGAGATTCGTGAAAAGCTGATCAG
CCTGTTTTCTGTTGAGCGCACATTTGAAAAAAGTGATGATGTAGATACGCAACTGTACGACAGCTTCTTCTCTCCAGCGG
ATCGCGCAGCGATGGATATTATTCGCGAGACCGACCCGAATAATCTGGCCGCTCTGGATATTGAGTTTGATGACAAACGC
ATTAAACCACTGTTGTTCCGTTACCGTGCTCGAAACTTCCCTGGCACGCTAGACGAACAGGAACAAAGACGTTGGGCACA
GCACTGCCGTGAAGTGTTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCACTATTAAAATCCGTTTATCGTTACGTAGAGAGCCTCGCCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795

Multiple sequence alignment