Detailed information
Bioinformatically predicted
Overview
| Name | pilF/pilF2 | Type | Machinery gene |
| Locus tag | pm9n_RS10845 | Genome accession | NZ_CP028927 |
| Coordinates | 2297597..2298142 (+) | Length | 181 a.a. |
| NCBI ID | WP_010907447.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain 9N | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2292597..2303142
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| pm9n_RS10830 (pm9n_10830) | - | 2292889..2294142 (+) | 1254 | WP_010907444.1 | AI-2E family transporter | - |
| pm9n_RS10835 (pm9n_10835) | - | 2294260..2296194 (+) | 1935 | WP_108575018.1 | tetratricopeptide repeat protein | - |
| pm9n_RS10840 (pm9n_10840) | - | 2296374..2297558 (+) | 1185 | WP_010907446.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| pm9n_RS10845 (pm9n_10845) | pilF/pilF2 | 2297597..2298142 (+) | 546 | WP_010907447.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| pm9n_RS10850 (pm9n_10850) | - | 2298265..2299221 (+) | 957 | WP_005725132.1 | helix-turn-helix domain-containing protein | - |
| pm9n_RS10855 (pm9n_10855) | ispG | 2299248..2300351 (+) | 1104 | WP_005719572.1 | flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | - |
| pm9n_RS10860 (pm9n_10860) | hisS | 2300381..2301652 (+) | 1272 | WP_010907448.1 | histidine--tRNA ligase | - |
| pm9n_RS10865 (pm9n_10865) | - | 2301671..2302282 (+) | 612 | WP_005725137.1 | YfgM family protein | - |
| pm9n_RS10870 (pm9n_10870) | - | 2302487..2302924 (+) | 438 | WP_010907449.1 | methyltransferase family protein | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20911.47 Da Isoelectric Point: 7.8913
>NTDB_id=288644 pm9n_RS10845 WP_010907447.1 2297597..2298142(+) (pilF/pilF2) [Pasteurella multocida strain 9N]
MTRVFQVWIASIFSLFLSACVSQEGNKTFDSHEAAKARIELGLGYLSQHDFARAKQNFDKALSHAPNYYLSHAVLAYLYQ
KQGHLDLARHAYEKAIKLDKNQGDVLNNYGAFLCQQGEFEQAYKQFSQALNAPHYYQHADTYENLVWCASFAKDTVRYQQ
NLQHLTQFDPNRAKKFPPHIE
MTRVFQVWIASIFSLFLSACVSQEGNKTFDSHEAAKARIELGLGYLSQHDFARAKQNFDKALSHAPNYYLSHAVLAYLYQ
KQGHLDLARHAYEKAIKLDKNQGDVLNNYGAFLCQQGEFEQAYKQFSQALNAPHYYQHADTYENLVWCASFAKDTVRYQQ
NLQHLTQFDPNRAKKFPPHIE
Nucleotide
Download Length: 546 bp
>NTDB_id=288644 pm9n_RS10845 WP_010907447.1 2297597..2298142(+) (pilF/pilF2) [Pasteurella multocida strain 9N]
ATGACGCGCGTTTTTCAAGTATGGATAGCAAGCATTTTTTCTCTTTTTCTTTCTGCCTGTGTGAGTCAAGAAGGTAACAA
AACGTTTGATTCACATGAGGCAGCAAAAGCCAGAATTGAATTAGGTTTAGGCTATTTATCTCAGCATGATTTTGCGCGAG
CAAAGCAAAATTTTGATAAAGCTTTATCCCATGCCCCAAATTACTATTTATCTCATGCGGTCTTAGCGTATCTCTACCAA
AAACAAGGTCATCTTGATTTAGCCCGTCACGCTTATGAAAAGGCGATAAAATTAGATAAAAATCAAGGCGATGTATTAAA
TAATTATGGTGCCTTTTTATGCCAACAAGGTGAGTTTGAACAAGCTTACAAACAATTTTCTCAAGCATTAAATGCCCCAC
ATTATTATCAACACGCCGATACTTATGAAAATTTAGTTTGGTGTGCGTCTTTTGCCAAAGACACTGTCCGTTATCAACAA
AATTTGCAACATTTAACGCAGTTTGATCCCAATAGAGCAAAAAAATTTCCGCCACATATTGAGTAA
ATGACGCGCGTTTTTCAAGTATGGATAGCAAGCATTTTTTCTCTTTTTCTTTCTGCCTGTGTGAGTCAAGAAGGTAACAA
AACGTTTGATTCACATGAGGCAGCAAAAGCCAGAATTGAATTAGGTTTAGGCTATTTATCTCAGCATGATTTTGCGCGAG
CAAAGCAAAATTTTGATAAAGCTTTATCCCATGCCCCAAATTACTATTTATCTCATGCGGTCTTAGCGTATCTCTACCAA
AAACAAGGTCATCTTGATTTAGCCCGTCACGCTTATGAAAAGGCGATAAAATTAGATAAAAATCAAGGCGATGTATTAAA
TAATTATGGTGCCTTTTTATGCCAACAAGGTGAGTTTGAACAAGCTTACAAACAATTTTCTCAAGCATTAAATGCCCCAC
ATTATTATCAACACGCCGATACTTATGAAAATTTAGTTTGGTGTGCGTCTTTTGCCAAAGACACTGTCCGTTATCAACAA
AATTTGCAACATTTAACGCAGTTTGATCCCAATAGAGCAAAAAAATTTCCGCCACATATTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
50 |
97.238 |
0.486 |
| pilF | Glaesserella parasuis strain SC1401 |
43.85 |
100 |
0.453 |