Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EHC69_RS00960 Genome accession   NZ_CP034298
Coordinates   196287..196961 (+) Length   224 a.a.
NCBI ID   WP_005482037.1    Uniprot ID   Q87T86
Organism   Vibrio parahaemolyticus strain 20160303005-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 191287..201961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC69_RS00935 (EHC69_00950) - 191409..192359 (-) 951 WP_029823987.1 Kdo(2)-lipid IV(A) acyltransferase -
  EHC69_RS00940 (EHC69_00955) slmA 192365..192955 (-) 591 WP_005478760.1 nucleoid occlusion factor SlmA -
  EHC69_RS00945 (EHC69_00960) coaBC 193116..194315 (-) 1200 WP_020839956.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EHC69_RS00955 (EHC69_00970) - 194500..196173 (+) 1674 WP_029809586.1 methyl-accepting chemotaxis protein -
  EHC69_RS00960 (EHC69_00975) radC 196287..196961 (+) 675 WP_005482037.1 RadC family protein Machinery gene
  EHC69_RS00965 (EHC69_00980) rpmB 197265..197501 (+) 237 WP_005467944.1 50S ribosomal protein L28 -
  EHC69_RS00970 (EHC69_00985) rpmG 197515..197685 (+) 171 WP_004410866.1 50S ribosomal protein L33 -
  EHC69_RS00975 (EHC69_00990) - 197861..198337 (+) 477 WP_025573481.1 hypothetical protein -
  EHC69_RS00980 (EHC69_00995) mutM 198440..199249 (+) 810 WP_025789359.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EHC69_RS00985 (EHC69_01000) - 199265..200188 (-) 924 WP_025789360.1 glycosyl transferase family 90 -
  EHC69_RS00990 (EHC69_01005) coaD 200185..200664 (-) 480 WP_025789361.1 pantetheine-phosphate adenylyltransferase -
  EHC69_RS00995 (EHC69_01010) - 200661..201692 (-) 1032 WP_025789362.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25334.11 Da        Isoelectric Point: 6.6112

>NTDB_id=288566 EHC69_RS00960 WP_005482037.1 196287..196961(+) (radC) [Vibrio parahaemolyticus strain 20160303005-1]
MILKALPNESMPREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRILDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=288566 EHC69_RS00960 WP_005482037.1 196287..196961(+) (radC) [Vibrio parahaemolyticus strain 20160303005-1]
ATGATACTCAAAGCTTTGCCAAATGAGTCGATGCCACGAGAGAAACTTCTGCAACGTGGGCCGCAGGCGTTAACAGATGC
CGAATTACTGGCGATATTTCTCCGTACGGGCACGCAAGGCATGAACGTGATTGAGTTGGCCGATTTCCTTATTCAAGATT
TTGGTTCGCTTAGGCAGTTGTTCTCCGCTTCAGAACAGGAGTTTTGTCAGCATAAAGGGTTAGGGCAGGCCAAATATGTG
CAATTGCAAGCGGTGTTAGAAATGACTCAGCGATATTTGGCGGAAACCCTCAAGCGTGGCGACGCCTTAACCAGCCCTGA
GCAAACTAAATTATATCTCTCCTCTATATTAAGAGACCGCCAAAGAGAGGCTTTTTACATTCTTTTCCTCGATAACCAAC
ACCGAGTAATAAAAGATGAGATTTTATTCGAAGGAACCTTGGATGCTGCATCAGTTTACCCTAGAGAAGTAGTAAAAAGA
GCCCTGCACCACAACGCGGCTGCTTTGATTTTGGCGCATAACCACCCGTCCGGTGTTGCCGAGCCGAGCCAGGCAGACCG
CAGGATTACAAGGCGATTAATTGATGCGTTGGCGCTGGTGGATATTCGTATTTTGGACCATTTCGTTATTGGCGATGGGG
AAAGTGTCTCTTTTGCTGAAAGAGGATGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87T86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.613

96.875

0.5
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.739

99.107

0.384