Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EHC66_RS15245 Genome accession   NZ_CP034294
Coordinates   3094140..3094814 (-) Length   224 a.a.
NCBI ID   WP_005482037.1    Uniprot ID   Q87T86
Organism   Vibrio parahaemolyticus strain 20140829008-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3089140..3099814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC66_RS15210 (EHC66_15415) - 3089408..3090439 (+) 1032 WP_108744585.1 glycosyltransferase family 4 protein -
  EHC66_RS15215 (EHC66_15420) coaD 3090436..3090915 (+) 480 WP_025789361.1 pantetheine-phosphate adenylyltransferase -
  EHC66_RS15220 (EHC66_15425) - 3090912..3091835 (+) 924 WP_108744586.1 glycosyl transferase family 90 -
  EHC66_RS15225 (EHC66_15430) mutM 3091851..3092660 (-) 810 WP_108744587.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EHC66_RS15230 (EHC66_15435) - 3092764..3093240 (-) 477 WP_108744588.1 hypothetical protein -
  EHC66_RS15235 (EHC66_15440) rpmG 3093416..3093586 (-) 171 WP_004410866.1 50S ribosomal protein L33 -
  EHC66_RS15240 (EHC66_15445) rpmB 3093600..3093836 (-) 237 WP_005467944.1 50S ribosomal protein L28 -
  EHC66_RS15245 (EHC66_15450) radC 3094140..3094814 (-) 675 WP_005482037.1 RadC family protein Machinery gene
  EHC66_RS15250 (EHC66_15455) - 3094928..3096601 (-) 1674 WP_015296117.1 methyl-accepting chemotaxis protein -
  EHC66_RS15260 (EHC66_15465) coaBC 3096786..3097985 (+) 1200 WP_025508117.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EHC66_RS15265 (EHC66_15470) slmA 3098146..3098736 (+) 591 WP_005478760.1 nucleoid occlusion factor SlmA -
  EHC66_RS15270 (EHC66_15475) - 3098742..3099692 (+) 951 WP_005496814.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25334.11 Da        Isoelectric Point: 6.6112

>NTDB_id=288548 EHC66_RS15245 WP_005482037.1 3094140..3094814(-) (radC) [Vibrio parahaemolyticus strain 20140829008-1]
MILKALPNESMPREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRILDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=288548 EHC66_RS15245 WP_005482037.1 3094140..3094814(-) (radC) [Vibrio parahaemolyticus strain 20140829008-1]
ATGATACTCAAAGCTTTGCCAAATGAGTCGATGCCACGAGAGAAACTTCTGCAACGTGGGCCGCAGGCGTTAACCGATGC
CGAATTACTGGCGATATTTCTCCGTACGGGCACGCAAGGCATGAACGTGATTGAGTTGGCCGATTTCCTTATTCAAGATT
TTGGTTCGCTTAGGCAGCTGTTCTCTGCTTCAGAACAAGAGTTTTGTCAGCATAAAGGGTTAGGGCAGGCCAAATATGTG
CAATTGCAAGCGGTGTTAGAAATGACTCAGCGATATTTGGCGGAAACCCTCAAGCGTGGCGACGCCTTAACCAGCCCTGA
GCAAACTAAATTATATCTCTCCTCTATATTAAGAGACCGCCAAAGAGAGGCTTTTTACATTCTTTTCCTCGATAACCAAC
ACCGAGTAATAAAAGATGAGATTTTATTCGAAGGAACCTTGGATGCCGCATCAGTTTACCCTAGAGAAGTAGTAAAAAGA
GCCCTGCACCACAACGCGGCTGCTTTGATTTTGGCGCACAATCACCCGTCCGGTGTCGCCGAGCCGAGCCAGGCAGACCG
CAGGATTACAAGGCGATTAATTGATGCGTTGGCGCTGGTGGATATTCGCATTTTGGACCATTTCGTTATTGGCGATGGGG
AAAGTGTCTCTTTTGCAGAAAGAGGATGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87T86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.613

96.875

0.5
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.739

99.107

0.384