Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   CJ12661_RS06990 Genome accession   NZ_CP028911
Coordinates   1379705..1380886 (-) Length   393 a.a.
NCBI ID   WP_044306258.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC 12661     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1374705..1385886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12661_RS06960 (CJ12661_1371) - 1375248..1375589 (+) 342 WP_002784057.1 hypothetical protein -
  CJ12661_RS06965 (CJ12661_1372) flgM 1375652..1375849 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  CJ12661_RS06970 (CJ12661_1373) - 1375892..1376326 (+) 435 WP_044306255.1 flagellar protein FlgN -
  CJ12661_RS06975 (CJ12661_1374) flgK 1376336..1378162 (+) 1827 WP_044306256.1 flagellar hook-associated protein FlgK -
  CJ12661_RS06980 (CJ12661_1375) - 1378179..1378943 (+) 765 WP_044306257.1 TIGR02757 family protein -
  CJ12661_RS06985 (CJ12661_1376) - 1378947..1379712 (+) 766 Protein_1349 TSUP family transporter -
  CJ12661_RS06990 (CJ12661_1377) ctsF 1379705..1380886 (-) 1182 WP_044306258.1 type II secretion system F family protein Machinery gene
  CJ12661_RS06995 (CJ12661_1378) ctsE 1380883..1382442 (-) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene
  CJ12661_RS07000 (CJ12661_1379) ctsX 1382432..1383019 (-) 588 WP_002851370.1 membrane protein Machinery gene
  CJ12661_RS07005 (CJ12661_1380) ctsP 1383023..1383631 (-) 609 WP_002899084.1 ATP-binding protein Machinery gene
  CJ12661_RS07010 (CJ12661_1381) ctsD 1383624..1385036 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CJ12661_RS07015 (CJ12661_1382) ctsR 1385014..1385325 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45689.28 Da        Isoelectric Point: 9.0938

>NTDB_id=288463 CJ12661_RS06990 WP_044306258.1 1379705..1380886(-) (ctsF) [Campylobacter jejuni strain NCTC 12661]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVALLVLFLALGIFLPMWELSSGVSFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=288463 CJ12661_RS06990 WP_044306258.1 1379705..1380886(-) (ctsF) [Campylobacter jejuni strain NCTC 12661]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTTAGTTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment