Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   CJ12661_RS07015 Genome accession   NZ_CP028911
Coordinates   1385014..1385325 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC 12661     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380014..1390325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12661_RS06995 (CJ12661_1378) ctsE 1380883..1382442 (-) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene
  CJ12661_RS07000 (CJ12661_1379) ctsX 1382432..1383019 (-) 588 WP_002851370.1 membrane protein Machinery gene
  CJ12661_RS07005 (CJ12661_1380) ctsP 1383023..1383631 (-) 609 WP_002899084.1 ATP-binding protein Machinery gene
  CJ12661_RS07010 (CJ12661_1381) ctsD 1383624..1385036 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CJ12661_RS07015 (CJ12661_1382) ctsR 1385014..1385325 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  CJ12661_RS07020 (CJ12661_1383) nifJ 1385349..1388909 (-) 3561 WP_002921284.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CJ12661_RS07025 (CJ12661_1384) - 1389002..1389643 (-) 642 WP_044306259.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=288468 CJ12661_RS07015 WP_002862131.1 1385014..1385325(-) (ctsR) [Campylobacter jejuni strain NCTC 12661]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=288468 CJ12661_RS07015 WP_002862131.1 1385014..1385325(-) (ctsR) [Campylobacter jejuni strain NCTC 12661]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment