Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   EHC64_RS02800 Genome accession   NZ_CP034289
Coordinates   542118..544112 (+) Length   664 a.a.
NCBI ID   WP_005493886.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20140722001-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 537118..549112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC64_RS02770 (EHC64_02835) rsmE 537270..538001 (-) 732 WP_005461719.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  EHC64_RS02775 (EHC64_02840) endA 538126..538821 (-) 696 WP_023585351.1 deoxyribonuclease I -
  EHC64_RS02780 (EHC64_02845) - 538941..539438 (-) 498 WP_020835372.1 SprT family zinc-dependent metalloprotease -
  EHC64_RS02785 (EHC64_02850) - 539505..540302 (-) 798 WP_005461722.1 DUF2189 domain-containing protein -
  EHC64_RS02790 (EHC64_02855) metK 540647..541801 (-) 1155 WP_005461723.1 methionine adenosyltransferase -
  EHC64_RS02800 (EHC64_02865) recP/tkt 542118..544112 (+) 1995 WP_005493886.1 transketolase Machinery gene
  EHC64_RS02805 (EHC64_02870) - 544190..545083 (-) 894 WP_005493888.1 LysR family transcriptional regulator -
  EHC64_RS02810 (EHC64_02875) - 545220..547178 (+) 1959 WP_005493890.1 ligand-gated channel protein -
  EHC64_RS02815 (EHC64_02880) epd 547309..548346 (+) 1038 WP_015297286.1 erythrose-4-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 664 a.a.        Molecular weight: 71997.15 Da        Isoelectric Point: 4.7995

>NTDB_id=288402 EHC64_RS02800 WP_005493886.1 542118..544112(+) (recP/tkt) [Vibrio parahaemolyticus strain 20140722001-1]
MSSRKHLANAIRALSMDGVQQANSGHPGAPMGMADIAEVLWRSHLNHNPANPEWADRDRFVLSNGHGSMLIYSLLHLSGY
ELSIDDLKNFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMALAEKALAAQFNKEGHDIIDHFTYVFMGDGCLME
GISHEACSLAGTLGLGKLIAFWDDNGISIDGHVEGWFSDDTPKRFEAYGWHVIPAVDGHDSEAINAAIEAAKADPRPTLI
CTKTIIGFGSPNKSGSHDCHGAPLGAEEIAAAREFLGWEHPAFEIPADVYAEWDAKAAGAEKEAAWNAKFEAYAAAYPTE
AAELKRRLNGELPAEWEEKANQIIADLQANPANIASRKASQNALEAFGQMLPEFMGGSADLAPSNLTMWSGSKSLEANDF
SGNYIHYGVREFGMTAIMNGIALHGGFVPYGATFLMFMEYARNAMRMAALMKIQNIQVYTHDSIGLGEDGPTHQPVEQMA
SLRLTPNMNTWRPCDQVESAVAWKLAIERKDAPTALIFSRQNLAQQPRSAEQVADIAKGAYILKDSEGKPELILIATGSE
VELAVKAAEQLTAEGKKVRVVSMPSTDAFDKQDAAYREAVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAP
ADQLFEMFGFTVENVVNTAKELLA

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=288402 EHC64_RS02800 WP_005493886.1 542118..544112(+) (recP/tkt) [Vibrio parahaemolyticus strain 20140722001-1]
ATGTCGTCTCGTAAACATCTTGCCAATGCAATTCGTGCTCTAAGCATGGATGGTGTTCAACAAGCTAACTCTGGCCACCC
AGGCGCACCTATGGGTATGGCTGATATCGCTGAAGTTCTTTGGCGCTCTCACCTAAACCACAACCCAGCTAACCCAGAGT
GGGCAGATCGCGACCGTTTTGTACTTTCAAACGGCCACGGTTCTATGCTGATCTACTCTCTACTGCACTTGAGCGGTTAC
GAGCTATCTATCGATGATCTGAAAAACTTCCGTCAGCTTCACTCTAAGACTCCAGGTCACCCAGAGTACGGTTACGCACC
AGGCATCGAAACGACAACAGGTCCTCTAGGTCAAGGTATCACGAACGCTGTTGGTATGGCTCTAGCAGAAAAAGCGCTAG
CAGCACAATTCAACAAAGAAGGCCACGACATCATTGACCATTTCACTTACGTGTTCATGGGTGATGGCTGTCTGATGGAA
GGTATCTCGCATGAGGCATGTTCTCTTGCTGGTACTCTAGGCCTAGGTAAACTGATCGCATTTTGGGATGACAACGGCAT
CTCTATCGATGGTCACGTTGAAGGTTGGTTCTCTGACGATACACCTAAGCGTTTCGAAGCTTACGGTTGGCACGTAATCC
CAGCAGTGGATGGCCACGATTCTGAAGCAATCAACGCAGCGATTGAAGCTGCAAAAGCAGACCCTCGTCCTACGCTAATT
TGTACGAAGACTATTATCGGTTTTGGTTCTCCAAACAAATCGGGTTCTCACGACTGTCACGGTGCACCACTAGGCGCTGA
AGAAATCGCAGCAGCACGTGAATTCCTAGGTTGGGAACACCCTGCATTTGAAATCCCTGCTGATGTATACGCAGAGTGGG
ATGCAAAAGCAGCTGGCGCTGAAAAAGAAGCAGCGTGGAACGCGAAGTTCGAAGCATACGCAGCGGCTTACCCAACAGAA
GCAGCAGAGCTTAAGCGTCGTCTAAATGGCGAACTTCCTGCTGAGTGGGAAGAGAAAGCAAACCAAATCATTGCTGATCT
TCAAGCAAACCCAGCAAACATTGCGTCACGTAAAGCATCTCAAAATGCTCTAGAAGCTTTCGGTCAAATGCTACCTGAAT
TCATGGGCGGCTCTGCTGACCTAGCGCCTTCTAACCTAACCATGTGGTCGGGTTCTAAGTCTCTAGAAGCGAACGATTTC
TCTGGTAACTACATCCACTACGGTGTACGTGAATTTGGTATGACTGCTATTATGAACGGTATCGCACTACACGGTGGTTT
CGTTCCTTACGGCGCAACATTCCTAATGTTCATGGAATACGCTCGTAACGCAATGCGTATGGCTGCTCTGATGAAAATTC
AGAACATCCAAGTGTACACACACGATTCTATCGGTCTTGGCGAAGATGGTCCAACTCACCAACCAGTTGAGCAAATGGCG
TCGCTACGTCTGACTCCAAACATGAACACATGGCGTCCATGTGACCAAGTTGAGTCTGCTGTAGCATGGAAACTAGCGAT
TGAACGTAAAGATGCACCAACAGCACTGATCTTCTCTCGTCAAAACCTAGCGCAACAACCACGCAGCGCTGAGCAAGTCG
CAGACATCGCGAAAGGTGCTTACATCCTGAAAGACAGTGAAGGTAAGCCTGAGCTAATCCTAATCGCAACAGGCTCTGAA
GTTGAGCTAGCAGTGAAAGCCGCTGAGCAACTAACAGCAGAAGGTAAGAAAGTACGCGTTGTTTCAATGCCATCAACAGA
TGCATTCGACAAACAAGACGCAGCTTACCGTGAAGCAGTTCTACCATCAGACGTAACAGCACGTATCGCTATTGAAGCGG
GCATCGCAGATTTCTGGTACAAGTACGTTGGTTTCGACGGTCGCATTATTGGTATGACAACATTCGGTGAATCTGCACCT
GCTGACCAGTTGTTCGAAATGTTTGGTTTCACTGTAGAAAACGTAGTGAACACAGCAAAAGAACTACTAGCGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, C-terminal domain (Transketolase_C)

(544-655)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.554

98.946

0.48

Multiple sequence alignment