Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EHC70_RS15130 Genome accession   NZ_CP034285
Coordinates   3084391..3085065 (-) Length   224 a.a.
NCBI ID   WP_005482037.1    Uniprot ID   Q87T86
Organism   Vibrio parahaemolyticus strain 20140624012-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3079391..3090065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC70_RS15100 (EHC70_15300) coaD 3080008..3080490 (-) 483 WP_005462497.1 pantetheine-phosphate adenylyltransferase -
  EHC70_RS15105 (EHC70_15305) mutM 3080587..3081396 (-) 810 WP_140103069.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EHC70_RS15110 (EHC70_15310) - 3081500..3081976 (-) 477 WP_025536620.1 hypothetical protein -
  EHC70_RS15115 (EHC70_15315) - 3082047..3083579 (-) 1533 WP_140103068.1 phosphoethanolamine transferase -
  EHC70_RS15120 (EHC70_15320) rpmG 3083667..3083837 (-) 171 WP_004410866.1 50S ribosomal protein L33 -
  EHC70_RS15125 (EHC70_15325) rpmB 3083851..3084087 (-) 237 WP_005467944.1 50S ribosomal protein L28 -
  EHC70_RS15130 (EHC70_15330) radC 3084391..3085065 (-) 675 WP_005482037.1 RadC family protein Machinery gene
  EHC70_RS15135 (EHC70_15335) - 3085179..3086852 (-) 1674 WP_140103067.1 methyl-accepting chemotaxis protein -
  EHC70_RS15145 (EHC70_15345) coaBC 3087037..3088236 (+) 1200 WP_025508117.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EHC70_RS15150 (EHC70_15350) slmA 3088397..3088987 (+) 591 WP_005478760.1 nucleoid occlusion factor SlmA -
  EHC70_RS15155 (EHC70_15355) - 3088993..3089943 (+) 951 WP_025508119.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25334.11 Da        Isoelectric Point: 6.6112

>NTDB_id=288370 EHC70_RS15130 WP_005482037.1 3084391..3085065(-) (radC) [Vibrio parahaemolyticus strain 20140624012-1]
MILKALPNESMPREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRILDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=288370 EHC70_RS15130 WP_005482037.1 3084391..3085065(-) (radC) [Vibrio parahaemolyticus strain 20140624012-1]
ATGATACTCAAAGCTTTGCCAAATGAGTCGATGCCACGAGAGAAACTTCTGCAACGTGGGCCGCAGGCGTTAACCGATGC
CGAATTACTGGCGATATTCCTCCGTACGGGCACGCAAGGCATGAACGTGATTGAGTTGGCCGATTTCCTTATTCAAGATT
TTGGTTCGCTTAGGCAGTTGTTCTCCGCTTCAGAACAGGAGTTTTGTCAGCATAAAGGGTTAGGGCAGGCCAAATATGTG
CAATTGCAAGCGGTGTTAGAAATGACTCAGCGATATTTGGCGGAAACCCTCAAGCGTGGCGACGCCTTAACCAGCCCTGA
GCAAACTAAATTATATCTCTCCTCTATATTAAGAGACCGCCAAAGAGAGGCTTTTTACATTCTTTTCCTCGATAACCAAC
ACCGAGTAATAAAAGATGAGATTTTATTCGAAGGAACCTTGGATGCCGCATCAGTTTACCCTAGAGAAGTAGTAAAAAGA
GCCCTGCACCACAACGCGGCTGCTTTGATTTTGGCGCATAACCACCCGTCCGGTGTCGCCGAGCCAAGCCAGGCAGACCG
CAGGATTACAAGGCGATTAATTGATGCGTTGGCGCTGGTGGATATTCGCATTTTGGACCATTTCGTTATTGGCGATGGGG
AAAGTGTGTCTTTTGCTGAAAGAGGATGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87T86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.613

96.875

0.5
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.739

99.107

0.384