Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   EHC70_RS06100 Genome accession   NZ_CP034285
Coordinates   1233711..1235543 (+) Length   610 a.a.
NCBI ID   WP_079859393.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20140624012-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1228711..1240543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC70_RS06085 (EHC70_06195) - 1229438..1230205 (+) 768 WP_140076474.1 nucleotidyltransferase domain-containing protein -
  EHC70_RS06090 (EHC70_06200) - 1230202..1232565 (-) 2364 WP_140076475.1 DNA polymerase II -
  EHC70_RS06095 (EHC70_06205) letA 1233065..1233709 (+) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  EHC70_RS06100 (EHC70_06210) uvrC 1233711..1235543 (+) 1833 WP_079859393.1 excinuclease ABC subunit UvrC Machinery gene
  EHC70_RS06105 (EHC70_06215) pgsA 1235590..1236147 (+) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69276.49 Da        Isoelectric Point: 9.5525

>NTDB_id=288335 EHC70_RS06100 WP_079859393.1 1233711..1235543(+) (uvrC) [Vibrio parahaemolyticus strain 20140624012-1]
MNPPFDSASFLKTVTHQPGVYRMYNADAVVIYVGKAKDLQKRLSSYFRKKVDSEKTRALVSNIAKIDVTVTHTETEALIL
EHNYIKQYLPKYNVLLRDDKSYPYIFISGHKHPRLSMHRGAKKRKGEYFGPYPDSGAVRETLHLLQKIFPVRQCEDTVYS
NRTRPCLMYQIGRCAGPCVSSIISDEEYAELVGFVRLFLQGKDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQ
EQQYVSEDSMDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIIL
NQELADDLEPIQKALSEVAGRKVHFHTSPTGARGRYLKLSNTNALTAITTKINHKMTINQRFKALRETLGMESIMRMECF
DISHTMGESTIASCVVFNNEGPVKQEYRRYNITGITGGDDYAAMGQALERRYSKQLDVEKIPDIIFIDGGKGQLNRAHEI
IAQYWGDWPKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQHIRDESHNHAIAGHRAKRGKTRRTSVLEG
IEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEIIFQALKQ

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=288335 EHC70_RS06100 WP_079859393.1 1233711..1235543(+) (uvrC) [Vibrio parahaemolyticus strain 20140624012-1]
GTGAATCCTCCTTTCGATTCGGCTTCCTTTCTCAAGACAGTAACTCATCAGCCCGGCGTGTACCGCATGTACAACGCCGA
TGCTGTTGTCATTTACGTCGGTAAAGCCAAAGATCTTCAAAAACGCCTTTCTAGTTACTTTCGCAAAAAAGTCGACAGTG
AAAAAACACGCGCTTTGGTGAGCAATATTGCCAAAATAGATGTCACGGTGACGCATACCGAGACAGAAGCGCTGATTCTT
GAACACAATTACATCAAGCAGTATTTGCCGAAATATAACGTGCTTCTGCGTGATGATAAATCGTACCCTTATATATTCAT
TAGCGGTCATAAACATCCGAGATTGTCGATGCATCGTGGGGCCAAGAAGCGCAAAGGCGAGTATTTTGGTCCTTACCCTG
ACTCTGGGGCGGTACGAGAAACGCTGCACTTGCTGCAAAAAATATTTCCTGTTAGACAGTGTGAAGATACGGTTTACTCC
AATCGAACGCGCCCTTGCTTGATGTATCAAATTGGTCGTTGCGCTGGCCCGTGTGTGAGCTCGATTATCTCAGATGAAGA
GTATGCAGAGCTGGTGGGTTTCGTCCGTCTATTTCTGCAAGGTAAAGATCAGCAAGTACTGAAGCAGTTGATAGAGAAAA
TGGAGGTTGCAAGTCAGCAACTTCGGTTTGAAGACGCGGCAAAGTTTCGTGATCAGATACAAGCGATAAGACGAGTCCAA
GAACAGCAATATGTATCGGAAGACAGCATGGACGATATGGATGTGCTGGGTTTTGCGCAAGAGAACGGCATCGCTTGTAT
CCACATATTGATGATTCGTCAGGGTAAAGTGTTAGGCAGTCGCAGTCATTTCCCTAAGATTCCTCAAAACACGAGCCAAC
AAGAGGTATTCGATAGCTTTTTGACTCAGTACTACCTGAGCCACAATGAGGCGCGAACAATCCCATCTCGAATAATACTG
AACCAAGAGTTGGCCGACGATCTCGAACCTATTCAAAAAGCACTGAGTGAAGTCGCAGGGCGTAAGGTTCATTTTCATAC
TTCTCCGACTGGTGCGAGAGGGAGATATCTTAAGCTGTCTAATACCAATGCACTTACGGCCATCACGACAAAAATCAACC
ATAAGATGACGATCAACCAACGTTTCAAAGCACTTCGCGAGACGTTGGGAATGGAGTCTATTATGAGGATGGAGTGTTTT
GATATTTCCCATACGATGGGCGAGAGCACTATCGCATCATGTGTGGTCTTCAACAACGAAGGTCCGGTAAAGCAAGAATA
CCGACGCTATAACATTACTGGAATCACGGGTGGCGATGATTATGCAGCGATGGGGCAGGCGTTAGAGCGGCGCTACTCAA
AGCAGTTGGACGTAGAAAAAATCCCTGACATCATCTTTATTGATGGTGGTAAAGGTCAGTTAAATCGTGCGCATGAAATC
ATCGCCCAGTATTGGGGAGATTGGCCTAAGCGACCAATCATGATTGGTATTGCCAAAGGTGTAACACGTAAACCTGGCCT
TGAAACCTTAATTACGGTTGATGGCGAAGAGTTCAACTTACCAAGTGATGCTCCAGCGCTACACTTGATTCAACATATTC
GCGATGAGAGTCATAATCATGCGATTGCGGGTCACAGAGCGAAACGTGGTAAAACTCGACGTACAAGTGTGTTGGAGGGG
ATTGAAGGTGTTGGGCCAAAACGACGCCAAGCTTTATTGAAATACATGGGTGGATTGCAGGAACTTAAGCGCGCAAGTGT
TGAAGAAATCGCCAAAGTGCCGGGAATTAGTCACTCTTTAGCAGAAATTATTTTCCAAGCATTGAAACAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-238)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(387-542)

GIY-YIG catalytic domain (GIY-YIG)

(18-93)

Helix-hairpin-helix domain (HHH_5)

(558-609)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.244

99.508

0.361

Multiple sequence alignment