Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | A1552VC_RS01525 | Genome accession | NZ_CP028894 |
| Coordinates | 292613..293620 (+) | Length | 335 a.a. |
| NCBI ID | WP_000116737.1 | Uniprot ID | O51804 |
| Organism | Vibrio cholerae strain A1552 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 248868..308667 | 292613..293620 | within | 0 |
Gene organization within MGE regions
Location: 248868..308667
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A1552VC_RS01290 (A1552VC_00252) | - | 248868..250628 (-) | 1761 | Protein_210 | GNAT family N-acyltransferase | - |
| A1552VC_RS01300 (A1552VC_00254) | - | 251388..253349 (-) | 1962 | WP_000466016.1 | DUF3732 domain-containing protein | - |
| A1552VC_RS01305 (A1552VC_00255) | - | 253350..253862 (-) | 513 | WP_000917213.1 | three component ABC system middle component | - |
| A1552VC_RS01310 (A1552VC_00256) | - | 253855..255021 (-) | 1167 | WP_000654528.1 | ABC-three component system protein | - |
| A1552VC_RS01315 (A1552VC_00257) | - | 255277..256152 (-) | 876 | WP_001139148.1 | MarR family transcriptional regulator | - |
| A1552VC_RS01320 (A1552VC_00258) | - | 256537..257181 (+) | 645 | WP_000042053.1 | inovirus Gp2 family protein | - |
| A1552VC_RS01325 (A1552VC_00259) | - | 257243..257917 (+) | 675 | WP_000149629.1 | inovirus Gp2 family protein | - |
| A1552VC_RS01330 (A1552VC_00260) | - | 257971..258570 (+) | 600 | WP_001883316.1 | inovirus-type Gp2 protein | - |
| A1552VC_RS01335 (A1552VC_00261) | - | 258634..258834 (+) | 201 | WP_001211742.1 | AlpA family transcriptional regulator | - |
| A1552VC_RS01340 (A1552VC_00262) | - | 258916..259356 (+) | 441 | WP_000122383.1 | ribonuclease HI | - |
| A1552VC_RS01345 | - | 259437..260628 (-) | 1192 | Protein_220 | IS3 family transposase | - |
| A1552VC_RS20150 | - | 260845..261037 (+) | 193 | Protein_221 | RNase H family protein | - |
| A1552VC_RS01350 | - | 261131..262041 (-) | 911 | Protein_222 | IS5-like element ISVch8 family transposase | - |
| A1552VC_RS01355 (A1552VC_00266) | - | 262430..262954 (-) | 525 | WP_000042161.1 | type II secretion system protein | - |
| A1552VC_RS01360 | - | 263228..263452 (-) | 225 | WP_306461095.1 | high-affinity zinc uptake system protein ZnuA precursor | - |
| A1552VC_RS01365 (A1552VC_00267) | - | 263650..264930 (+) | 1281 | WP_001883323.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| A1552VC_RS01370 (A1552VC_00268) | - | 265108..265335 (-) | 228 | WP_000749780.1 | hypothetical protein | - |
| A1552VC_RS01375 (A1552VC_00269) | - | 265383..265751 (-) | 369 | WP_000176666.1 | hypothetical protein | - |
| A1552VC_RS01380 (A1552VC_00270) | - | 265782..266516 (-) | 735 | WP_000066832.1 | WYL domain-containing protein | - |
| A1552VC_RS01390 (A1552VC_00271) | - | 266835..267278 (-) | 444 | WP_000041085.1 | DUF2787 domain-containing protein | - |
| A1552VC_RS01395 (A1552VC_00272) | - | 267328..267765 (-) | 438 | WP_000572499.1 | DUF2787 domain-containing protein | - |
| A1552VC_RS01400 (A1552VC_00273) | radC | 267762..268235 (-) | 474 | WP_001068472.1 | DNA repair protein RadC | - |
| A1552VC_RS01405 (A1552VC_00274) | - | 268547..270358 (+) | 1812 | WP_000110139.1 | DUF262 domain-containing protein | - |
| A1552VC_RS01410 (A1552VC_00275) | - | 270358..272823 (+) | 2466 | WP_000434811.1 | DUF262 domain-containing protein | - |
| A1552VC_RS01415 (A1552VC_00276) | - | 273190..275145 (+) | 1956 | WP_001143868.1 | hypothetical protein | - |
| A1552VC_RS01420 (A1552VC_00278) | - | 275452..276629 (+) | 1178 | WP_100068541.1 | IS3 family transposase | - |
| A1552VC_RS01425 (A1552VC_00279) | - | 276665..277906 (-) | 1242 | WP_001129565.1 | integrase domain-containing protein | - |
| A1552VC_RS01435 (A1552VC_00281) | rpoD | 278292..280169 (-) | 1878 | WP_000372618.1 | RNA polymerase sigma factor RpoD | - |
| A1552VC_RS01440 (A1552VC_00282) | dnaG | 280268..282031 (-) | 1764 | WP_000907210.1 | DNA primase | - |
| A1552VC_RS01445 (A1552VC_00283) | - | 282121..282564 (-) | 444 | WP_001173892.1 | GatB/YqeY domain-containing protein | - |
| A1552VC_RS01450 (A1552VC_00284) | rpsU | 282594..282809 (-) | 216 | WP_001145625.1 | 30S ribosomal protein S21 | - |
| A1552VC_RS01455 (A1552VC_00285) | tsaD | 283050..284069 (+) | 1020 | WP_001220122.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| A1552VC_RS01460 (A1552VC_00286) | - | 284223..285035 (+) | 813 | WP_001087495.1 | alpha/beta fold hydrolase | - |
| A1552VC_RS01465 (A1552VC_00287) | plsY | 285084..285710 (-) | 627 | WP_000188027.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| A1552VC_RS01475 (A1552VC_00288) | folB | 285899..286252 (+) | 354 | WP_000361954.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| A1552VC_RS01480 (A1552VC_00289) | folK | 286249..286755 (+) | 507 | WP_000627006.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| A1552VC_RS01485 (A1552VC_00290) | - | 286752..287555 (+) | 804 | WP_000119813.1 | undecaprenyl-diphosphate phosphatase | - |
| A1552VC_RS01490 (A1552VC_00291) | ftsB | 287670..287954 (+) | 285 | WP_001263189.1 | cell division protein FtsB | - |
| A1552VC_RS01495 (A1552VC_00292) | ispD | 287951..288649 (+) | 699 | WP_001061951.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| A1552VC_RS01500 (A1552VC_00293) | ispF | 288646..289122 (+) | 477 | WP_000619209.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| A1552VC_RS01505 (A1552VC_00294) | truD | 289152..290237 (+) | 1086 | WP_000129752.1 | tRNA pseudouridine(13) synthase TruD | - |
| A1552VC_RS01510 (A1552VC_00295) | surE | 290239..290991 (+) | 753 | WP_000698379.1 | 5'/3'-nucleotidase SurE | - |
| A1552VC_RS01515 (A1552VC_00296) | - | 290984..291610 (+) | 627 | WP_000002982.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| A1552VC_RS01520 (A1552VC_00297) | nlpD | 291610..292539 (+) | 930 | WP_053036405.1 | murein hydrolase activator NlpD | - |
| A1552VC_RS01525 (A1552VC_00298) | rpoS | 292613..293620 (+) | 1008 | WP_000116737.1 | RNA polymerase sigma factor RpoS | Regulator |
| A1552VC_RS01530 (A1552VC_00299) | mutS | 293713..296301 (-) | 2589 | WP_001894770.1 | DNA mismatch repair protein MutS | - |
| A1552VC_RS01535 (A1552VC_00300) | cysM | 296569..297456 (-) | 888 | WP_001279365.1 | cysteine synthase CysM | - |
| A1552VC_RS01540 (A1552VC_00301) | cysP | 297840..298841 (+) | 1002 | WP_001079835.1 | thiosulfate ABC transporter substrate-binding protein CysP | - |
| A1552VC_RS01545 (A1552VC_00302) | cysT | 298918..299769 (+) | 852 | WP_000531810.1 | sulfate/thiosulfate ABC transporter permease CysT | - |
| A1552VC_RS01550 (A1552VC_00303) | cysW | 299780..300643 (+) | 864 | WP_000951362.1 | sulfate ABC transporter permease subunit CysW | - |
| A1552VC_RS01555 (A1552VC_00304) | - | 300640..301770 (+) | 1131 | WP_000027776.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| A1552VC_RS01560 (A1552VC_00305) | pncC | 301937..302443 (+) | 507 | WP_000853811.1 | nicotinamide-nucleotide amidase | - |
| A1552VC_RS01565 (A1552VC_00306) | recA | 302577..303641 (+) | 1065 | WP_000344154.1 | recombinase RecA | Machinery gene |
| A1552VC_RS01570 (A1552VC_00307) | recX | 303774..304232 (+) | 459 | WP_000006855.1 | recombination regulator RecX | - |
| A1552VC_RS01575 (A1552VC_00308) | alaS | 304405..306987 (+) | 2583 | WP_000481017.1 | alanine--tRNA ligase | - |
| A1552VC_RS01580 (A1552VC_00309) | - | 307191..308378 (+) | 1188 | WP_001883372.1 | aspartate kinase | - |
| A1552VC_RS01585 (A1552VC_00310) | csrA | 308470..308667 (+) | 198 | WP_000906485.1 | carbon storage regulator CsrA | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38534.39 Da Isoelectric Point: 4.3648
>NTDB_id=288244 A1552VC_RS01525 WP_000116737.1 292613..293620(+) (rpoS) [Vibrio cholerae strain A1552]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN
Nucleotide
Download Length: 1008 bp
>NTDB_id=288244 A1552VC_RS01525 WP_000116737.1 292613..293620(+) (rpoS) [Vibrio cholerae strain A1552]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
100 |
100 |
1 |