Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | Sa5Y_RS01385 | Genome accession | NZ_CP028892 |
| Coordinates | 281484..282068 (+) | Length | 194 a.a. |
| NCBI ID | WP_000902746.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain Sa5Y | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 276484..287068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Sa5Y_RS01370 (Sa5Y_VC00270) | oxyR | 276890..277783 (+) | 894 | WP_094392824.1 | DNA-binding transcriptional regulator OxyR | - |
| Sa5Y_RS01375 (Sa5Y_VC00271) | - | 277858..280335 (-) | 2478 | WP_000668742.1 | penicillin-binding protein 1A | - |
| Sa5Y_RS01380 (Sa5Y_VC00272) | pilM | 280478..281494 (+) | 1017 | WP_094392825.1 | type IV pilus assembly protein PilM | Machinery gene |
| Sa5Y_RS01385 (Sa5Y_VC00273) | pilN | 281484..282068 (+) | 585 | WP_000902746.1 | PilN domain-containing protein | Machinery gene |
| Sa5Y_RS01390 (Sa5Y_VC00274) | pilO | 282061..282651 (+) | 591 | WP_162298793.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| Sa5Y_RS01395 (Sa5Y_VC00275) | pilP | 282641..283159 (+) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| Sa5Y_RS01400 (Sa5Y_VC00276) | pilQ | 283185..284900 (+) | 1716 | WP_162298794.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| Sa5Y_RS01405 (Sa5Y_VC00277) | aroK | 285087..285611 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| Sa5Y_RS01410 (Sa5Y_VC00278) | aroB | 285639..286724 (+) | 1086 | WP_000439809.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 22022.45 Da Isoelectric Point: 9.7294
>NTDB_id=288202 Sa5Y_RS01385 WP_000902746.1 281484..282068(+) (pilN) [Vibrio cholerae strain Sa5Y]
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQEGGAHNG
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQEGGAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=288202 Sa5Y_RS01385 WP_000902746.1 281484..282068(+) (pilN) [Vibrio cholerae strain Sa5Y]
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGAGGGAGGTGCACATAATGGCTAG
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGAGGGAGGTGCACATAATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
99.485 |
100 |
0.995 |
| pilN | Vibrio campbellii strain DS40M4 |
60.452 |
91.237 |
0.552 |