Detailed information NTG0288200

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: Sa5Y_RS01170
• Genome accession: NZ_CP028892
• Coordinates: 237597..238604 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain Sa5Y
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 232597..243604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Sa5Y_RS01150 (Sa5Y_VC00225)	metJ	232601..232918 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
Sa5Y_RS01155 (Sa5Y_VC00226)	-	233029..234306 (-)	1278	WP_001278591.1	malic enzyme-like NAD(P)-binding protein	-
Sa5Y_RS01160 (Sa5Y_VC00227)	rpmE	234614..234832 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
Sa5Y_RS01165 (Sa5Y_VC00228)	priA	235087..237291 (+)	2205	WP_094392829.1	primosomal protein N'	-
Sa5Y_RS01170 (Sa5Y_VC00229)	cytR	237597..238604 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
Sa5Y_RS01175 (Sa5Y_VC00230)	-	238776..239327 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
Sa5Y_RS01180 (Sa5Y_VC00231)	hslV	239464..240021 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
Sa5Y_RS01185 (Sa5Y_VC00232)	hslU	240087..241418 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
Sa5Y_RS01190 (Sa5Y_VC00233)	-	241522..242439 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
Sa5Y_RS01195 (Sa5Y_VC00234)	rraA	242514..243029 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=288200 Sa5Y_RS01170 WP_000224452.1 237597..238604(+) (cytR) [Vibrio cholerae strain Sa5Y]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=288200 Sa5Y_RS01170 WP_000224452.1 237597..238604(+) (cytR) [Vibrio cholerae strain Sa5Y]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGCAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGATGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACCTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCACAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCCGTGGTTGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACGATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTGCGTGCAGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904