Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   EIA51_RS08550 Genome accession   NZ_CP034110
Coordinates   1810574..1811269 (-) Length   231 a.a.
NCBI ID   WP_035686962.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain FARPER-174     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1805574..1816269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIA51_RS08525 (EIA51_08525) - 1805920..1806816 (-) 897 WP_035686953.1 AraC family transcriptional regulator -
  EIA51_RS08530 (EIA51_08530) - 1807000..1807335 (+) 336 WP_017807091.1 carboxymuconolactone decarboxylase family protein -
  EIA51_RS08535 (EIA51_08535) - 1807491..1808852 (-) 1362 WP_035686956.1 alanine/glycine:cation symporter family protein -
  EIA51_RS08540 (EIA51_08540) - 1809330..1809596 (-) 267 WP_035686958.1 GNAT family N-acetyltransferase -
  EIA51_RS11910 yacG 1809607..1809810 (-) 204 WP_046097598.1 DNA gyrase inhibitor YacG -
  EIA51_RS08545 (EIA51_08545) coaE 1809931..1810431 (-) 501 Protein_1662 dephospho-CoA kinase -
  EIA51_RS08550 (EIA51_08550) pilD 1810574..1811269 (-) 696 WP_035686962.1 prepilin peptidase Machinery gene
  EIA51_RS08555 (EIA51_08555) pilC 1811266..1812480 (-) 1215 WP_081637525.1 type II secretion system F family protein Machinery gene
  EIA51_RS08560 (EIA51_08560) manX 1812867..1813850 (+) 984 WP_124994871.1 PTS mannose transporter subunit IIAB -
  EIA51_RS08565 (EIA51_08565) - 1813863..1814666 (+) 804 WP_017807082.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  EIA51_RS08570 (EIA51_08570) - 1814680..1815516 (+) 837 WP_017807081.1 PTS mannose transporter subunit IID -
  EIA51_RS08575 (EIA51_08575) - 1815610..1816164 (+) 555 WP_017807080.1 YobD family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26387.51 Da        Isoelectric Point: 8.0864

>NTDB_id=287989 EIA51_RS08550 WP_035686962.1 1810574..1811269(-) (pilD) [Avibacterium paragallinarum strain FARPER-174]
MKELASFFFGGLVGAGIFYAVSTFTARLSFTVWNDYCQLFTPQETAMPQTTLTKKKCGHFWHYFFAIGGLFALCVQLNAN
IWVALWWACWLGALIFIGLIDGLYRLISPLLCVWLFLWGLLSAYWQILPFGLEQCVISAVSIFVIFYGLYALCRWGLKKE
MLGEGDCWLVLALGAEIQLEKLPHFVFLASLYGIVFYLIKQRLVKKSHHNATPEIPFAPFLILSALTLVWW

Nucleotide


Download         Length: 696 bp        

>NTDB_id=287989 EIA51_RS08550 WP_035686962.1 1810574..1811269(-) (pilD) [Avibacterium paragallinarum strain FARPER-174]
ATGAAGGAACTAGCCAGTTTTTTCTTCGGCGGTTTGGTCGGTGCAGGCATTTTTTATGCCGTTTCAACCTTTACCGCACG
GCTTTCGTTTACTGTATGGAACGATTATTGCCAGCTTTTCACCCCGCAAGAAACCGCAATGCCACAAACAACATTAACAA
AGAAAAAGTGCGGTCATTTCTGGCACTACTTTTTTGCGATTGGTGGTTTATTTGCCCTGTGCGTCCAGCTCAATGCTAAC
ATTTGGGTTGCGTTATGGTGGGCGTGTTGGCTGGGTGCTTTGATTTTTATTGGCTTAATTGACGGGCTTTATCGGCTTAT
TTCCCCCTTGCTGTGTGTTTGGCTTTTCTTGTGGGGATTGCTTAGTGCGTACTGGCAAATTTTGCCTTTCGGCTTGGAAC
AGTGCGTGATTAGTGCGGTCAGTATTTTCGTGATTTTTTATGGGCTGTATGCCCTTTGCCGATGGGGATTAAAAAAAGAA
ATGCTCGGCGAGGGCGATTGCTGGTTAGTGCTGGCTCTCGGGGCAGAAATTCAGCTTGAAAAACTACCGCACTTTGTTTT
TTTAGCTAGCCTTTACGGCATTGTTTTTTATTTGATCAAGCAACGCCTCGTTAAAAAATCACACCACAACGCTACCCCCG
AAATCCCCTTTGCCCCGTTTCTTATTCTTTCCGCTTTAACGCTTGTGTGGTGGTAG

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(93-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

37.069

100

0.372
  pilD Haemophilus influenzae 86-028NP

36.638

100

0.368