Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   EIA51_RS02545 Genome accession   NZ_CP034110
Coordinates   478190..478957 (+) Length   255 a.a.
NCBI ID   WP_035688099.1    Uniprot ID   A0A0F5EV19
Organism   Avibacterium paragallinarum strain FARPER-174     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473190..483957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIA51_RS02535 (EIA51_02535) - 474562..475215 (-) 654 WP_035688094.1 IS1595 family transposase -
  EIA51_RS02540 (EIA51_02540) - 475482..478031 (-) 2550 WP_035688097.1 penicillin-binding protein 1A -
  EIA51_RS02545 (EIA51_02545) comA 478190..478957 (+) 768 WP_035688099.1 hypothetical protein Machinery gene
  EIA51_RS02550 (EIA51_02550) - 478987..479499 (+) 513 WP_046097217.1 PilN domain-containing protein -
  EIA51_RS02555 (EIA51_02555) - 479492..480013 (+) 522 WP_124994794.1 hypothetical protein -
  EIA51_RS02560 (EIA51_02560) - 480013..480372 (+) 360 WP_017806828.1 hypothetical protein -
  EIA51_RS02565 (EIA51_02565) comE 480381..481703 (+) 1323 WP_035688106.1 type IV pilus secretin PilQ Machinery gene
  EIA51_RS02570 (EIA51_02570) aroK 481937..482464 (+) 528 WP_035688108.1 shikimate kinase AroK -
  EIA51_RS02575 (EIA51_02575) aroB 482481..483569 (+) 1089 WP_035688110.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 30475.31 Da        Isoelectric Point: 7.8120

>NTDB_id=287968 EIA51_RS02545 WP_035688099.1 478190..478957(+) (comA) [Avibacterium paragallinarum strain FARPER-174]
MLKRKISCKKQLQIGIWKGIRTCDFVWFDEENRPRFCVIENDISFERLKPNLLVGECNYSLKTLKFVASITSQYTWIKTL
LLPHSLTISEYEQQCRFLLSQELPIIIDDIWFDYQVEQLKEGVKLTVYAVKKKIAEDYLKIYQPLSIQVLDCISNTVIRA
FHYFIDYKIEKKSLFFYQDEVYVFIINPNTNQIQTIHKTKISLTTLYEKFCQRYSFDCDQVYYYSSLNNTQEYSPDWIRI
NTDIPFIALGNALWK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=287968 EIA51_RS02545 WP_035688099.1 478190..478957(+) (comA) [Avibacterium paragallinarum strain FARPER-174]
ATGTTAAAAAGAAAAATTTCTTGTAAGAAACAGCTGCAAATTGGTATCTGGAAAGGTATCAGAACTTGTGATTTTGTCTG
GTTTGATGAGGAAAATCGTCCTCGCTTTTGTGTAATTGAGAATGATATTTCGTTTGAGCGTTTGAAACCTAATTTGTTAG
TTGGTGAATGTAATTATTCATTAAAAACTTTGAAATTTGTAGCATCTATTACATCGCAATATACTTGGATAAAAACATTG
TTGCTTCCTCATTCTCTAACTATTTCTGAATATGAACAGCAATGCCGTTTCTTATTGTCTCAAGAATTACCTATTATTAT
CGATGATATTTGGTTTGATTATCAAGTAGAACAGCTAAAAGAAGGTGTTAAATTAACTGTGTATGCGGTTAAAAAAAAGA
TAGCCGAAGATTATCTTAAGATATATCAGCCTTTATCTATTCAAGTTTTAGATTGTATCTCAAATACTGTAATTAGAGCG
TTTCATTATTTTATTGATTATAAAATAGAGAAAAAATCACTGTTTTTTTATCAAGATGAAGTCTATGTATTTATTATTAA
TCCTAATACAAATCAAATCCAAACTATACATAAAACAAAGATTTCACTTACCACTTTGTATGAGAAATTTTGTCAACGCT
ATTCATTTGATTGTGATCAAGTTTATTATTATTCTTCGTTAAATAATACACAAGAATATTCTCCAGATTGGATTAGAATA
AATACAGATATTCCATTTATAGCATTAGGAAATGCATTATGGAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EV19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

38.306

97.255

0.373
  comA Haemophilus influenzae Rd KW20

38.306

97.255

0.373

Multiple sequence alignment