Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CDG57_RS02315 Genome accession   NZ_CP028800
Coordinates   432172..432831 (-) Length   219 a.a.
NCBI ID   WP_004964364.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCHAJ59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 427172..437831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG57_RS02280 (CDG57_02290) - 427240..427872 (+) 633 WP_004909421.1 phospholipid-binding protein MlaC -
  CDG57_RS02285 (CDG57_02295) - 427884..428171 (+) 288 WP_004964385.1 lipid asymmetry maintenance protein MlaB -
  CDG57_RS02290 (CDG57_02300) - 428307..429461 (+) 1155 WP_005003123.1 IS4 family transposase -
  CDG57_RS02295 (CDG57_02305) - 429485..430036 (-) 552 WP_004964378.1 hypothetical protein -
  CDG57_RS02300 (CDG57_02310) - 430038..431051 (-) 1014 WP_004964376.1 magnesium and cobalt transport protein CorA -
  CDG57_RS02305 (CDG57_02315) - 431202..431786 (+) 585 WP_004964372.1 TIGR00730 family Rossman fold protein -
  CDG57_RS02310 (CDG57_02320) - 431796..432182 (+) 387 WP_005403262.1 NUDIX hydrolase -
  CDG57_RS02315 (CDG57_02325) comF 432172..432831 (-) 660 WP_004964364.1 ComF family protein Machinery gene
  CDG57_RS02320 (CDG57_02330) recG 432824..434869 (-) 2046 WP_004964361.1 ATP-dependent DNA helicase RecG -
  CDG57_RS02325 (CDG57_02335) - 434889..435707 (+) 819 WP_004964357.1 NAD-dependent epimerase/dehydratase family protein -
  CDG57_RS02330 (CDG57_02340) - 435832..436797 (+) 966 WP_004964356.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25101.41 Da        Isoelectric Point: 9.0234

>NTDB_id=287794 CDG57_RS02315 WP_004964364.1 432172..432831(-) (comF) [Acinetobacter junii strain WCHAJ59]
MFKLLSRRAQQVADYFTACHLCDIGVRAHHGVCQSCWQQLPWLKHKIERHQQDILIACHYEYPISQLIQQFKYEQQLHHL
RLLSGLLLELKLPKVHAIVPMPISNDRLMERGFNQSLLIAKELSKVLNIPVWQPVQRLAQHSQKGLSRLERLENIEDQFV
AKTHLQLIYRKVLIIDDVVTTGSSINALSLVLKQLGCQHIYSACLAAGGVKQANHDVIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=287794 CDG57_RS02315 WP_004964364.1 432172..432831(-) (comF) [Acinetobacter junii strain WCHAJ59]
ATGTTTAAATTATTGAGCCGAAGAGCACAACAAGTTGCTGATTATTTCACAGCATGTCACTTATGCGATATTGGTGTCAG
AGCACACCATGGTGTTTGTCAAAGTTGCTGGCAACAATTACCATGGTTAAAACATAAAATCGAACGACATCAGCAAGATA
TACTTATTGCCTGTCATTATGAATATCCGATCAGCCAACTCATTCAACAATTTAAATACGAGCAACAGTTACATCATCTT
CGATTACTTAGCGGACTATTACTGGAACTTAAGCTGCCAAAAGTACATGCCATCGTACCAATGCCTATTTCAAATGATCG
ACTGATGGAAAGAGGTTTCAATCAATCACTTTTAATCGCTAAGGAACTGAGCAAAGTATTGAATATTCCAGTATGGCAGC
CCGTGCAACGACTAGCCCAACATTCTCAAAAAGGTTTAAGCCGCTTAGAGCGACTGGAAAATATAGAAGATCAATTTGTC
GCTAAAACACATCTTCAATTGATTTATAGAAAAGTGCTGATTATTGATGATGTCGTGACCACAGGCAGCTCTATCAATGC
CCTCAGTCTAGTATTAAAACAGTTGGGGTGCCAACATATATACTCAGCCTGTTTAGCCGCTGGTGGTGTTAAACAGGCAA
ATCATGATGTTATTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

63.158

95.434

0.603
  comF Acinetobacter baumannii D1279779

62.679

95.434

0.598

Multiple sequence alignment