Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   EGH16_RS02745 Genome accession   NZ_CP034032
Coordinates   454031..454504 (+) Length   157 a.a.
NCBI ID   WP_195764428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ01     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449031..459504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH16_RS02720 (EGH16_02720) dnaB 449626..451032 (+) 1407 WP_050163863.1 replicative DNA helicase -
  EGH16_RS02725 (EGH16_02725) pilH 451187..451849 (+) 663 WP_047949526.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH16_RS02730 (EGH16_02730) pilV/pilI 451881..452498 (+) 618 WP_047949522.1 type IV pilus modification protein PilV Regulator
  EGH16_RS02735 (EGH16_02735) pilJ 452495..453442 (+) 948 WP_047949523.1 PilW family protein Machinery gene
  EGH16_RS02740 (EGH16_02740) pilK 453421..454029 (+) 609 WP_047949524.1 pilus assembly protein Machinery gene
  EGH16_RS02745 (EGH16_02745) pilL 454031..454504 (+) 474 WP_195764428.1 PilX family type IV pilin Machinery gene
  EGH16_RS02760 (EGH16_02760) - 455116..455561 (-) 446 Protein_459 AzlC family ABC transporter permease -
  EGH16_RS02765 (EGH16_02765) dut 455727..456179 (+) 453 WP_003690909.1 dUTP diphosphatase -
  EGH16_RS02770 (EGH16_02770) dapC 456257..457444 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  EGH16_RS02775 (EGH16_02775) yaaA 457709..458488 (+) 780 WP_047949581.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17534.43 Da        Isoelectric Point: 9.8238

>NTDB_id=287534 EGH16_RS02745 WP_195764428.1 454031..454504(+) (pilL) [Neisseria gonorrhoeae strain FQ01]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQTIKSKLEIFVSGYKM
NPKIAKKYSVSVKFVDAEKPRVYRLVGVPNVGTGYTLSVWMNSVGDGYKCRDAASAKVYKEQLSGDGGCEALSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=287534 EGH16_RS02745 WP_195764428.1 454031..454504(+) (pilL) [Neisseria gonorrhoeae strain FQ01]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATGCGGAAAAACCAAGGGTATACAGGTTGGTCGG
TGTTCCGAACGTGGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCGGCAAAGGTCTATAAAGAGCAGTTGTCCGGAGACGGTGGTTGTGAAGCCTTATCCAACCGTAAGAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

89.809

100

0.898
  pilX Neisseria meningitidis 8013

85.35

100

0.854