Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH18_RS14540 Genome accession   NZ_CP034028
Coordinates   2106303..2106953 (-) Length   216 a.a.
NCBI ID   WP_082298951.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2101303..2111953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH18_RS12470 (EGH18_12470) pilE 2101365..2101865 (-) 501 WP_124693335.1 pilin Machinery gene
  EGH18_RS14535 (EGH18_12490) - 2102680..2102786 (-) 107 Protein_2135 pilin -
  EGH18_RS12500 (EGH18_12500) lpxC 2102914..2103837 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EGH18_RS12510 (EGH18_12510) pilE 2104376..2104675 (-) 300 WP_124693336.1 pilin Machinery gene
  EGH18_RS12515 (EGH18_12515) - 2104732..2105106 (-) 375 Protein_2138 pilin -
  EGH18_RS12525 (EGH18_12525) - 2105549..2105899 (-) 351 Protein_2139 pilin -
  EGH18_RS12530 (EGH18_12530) - 2105926..2106276 (-) 351 Protein_2140 pilin -
  EGH18_RS14540 (EGH18_12535) pilE 2106303..2106953 (-) 651 WP_082298951.1 pilin Machinery gene
  EGH18_RS12540 (EGH18_12540) - 2107069..2107441 (-) 373 Protein_2142 pilin -
  EGH18_RS12550 (EGH18_12550) - 2107576..2107922 (-) 347 Protein_2143 pilin -
  EGH18_RS12555 (EGH18_12555) - 2107943..2108302 (-) 360 Protein_2144 pilin -
  EGH18_RS12570 (EGH18_12570) - 2109101..2109226 (+) 126 Protein_2145 IS110 family transposase -
  EGH18_RS12585 (EGH18_12585) - 2109775..2110464 (-) 690 WP_050157270.1 M48 family metallopeptidase -
  EGH18_RS12590 (EGH18_12590) - 2110461..2111204 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  EGH18_RS12595 (EGH18_12595) gmhB 2111234..2111797 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23456.36 Da        Isoelectric Point: 9.6730

>NTDB_id=287441 EGH18_RS14540 WP_082298951.1 2106303..2106953(-) (pilE) [Neisseria gonorrhoeae strain FQ04]
MASPASNIKGKYVQKVEVNNGVVTATMASSNVNKEIKDKKLSLWAKREDGSVKWFCGQPVTRANADAAKDDVNAAKDTNK
IETKHLPSTCRDESSAGCTKTPEYYLNNGEWPKDNTSAGVASSAEIKGKYVQKVEVAKGVVTATMKSDGVNKEIKGKKLS
LWGRREDGSVKWFCGQPVKRDNAKADNDDVKADAADKDKIETKHLPSTCRDTSSAK

Nucleotide


Download         Length: 651 bp        

>NTDB_id=287441 EGH18_RS14540 WP_082298951.1 2106303..2106953(-) (pilE) [Neisseria gonorrhoeae strain FQ04]
GTGGCATCCCCCGCCTCCAACATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTTACCGCCACAAT
GGCTTCAAGCAACGTAAACAAAGAAATCAAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCGCCAACGCCGACGCCGCCAAAGACGACGTCAACGCCGCCAAAGACACCAACAAA
ATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCACAAAAACACCCGAATATTACCTGAA
TAACGGCGAATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCCTCCGCCGAAATCAAAGGCAAATATGTTCAGAAAG
TTGAAGTCGCAAAAGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCC
CTGTGGGGCAGGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACAACGCCAAAGCCGACAA
CGACGACGTCAAAGCCGACGCCGCCGACAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGTGATACGTCAT
CTGCCAAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(5-91)

Pilin (bacterial filament) (Pilin)

(99-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75.221

52.315

0.394
  pilE Neisseria gonorrhoeae MS11

72.566

52.315

0.38

Multiple sequence alignment