Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilL   Type   Machinery gene
Locus tag   EGH20_RS02765 Genome accession   NZ_CP034026
Coordinates   453285..453758 (+) Length   157 a.a.
NCBI ID   WP_170959666.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ20     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 448285..458758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH20_RS02735 (EGH20_02735) dnaB 448712..450118 (+) 1407 WP_047920786.1 replicative DNA helicase -
  EGH20_RS02745 (EGH20_02745) pilH 450426..451091 (+) 666 WP_047920982.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH20_RS02750 (EGH20_02750) pilV/pilI 451123..451731 (+) 609 WP_047920984.1 type IV pilus modification protein PilV Regulator
  EGH20_RS02755 (EGH20_02755) pilJ 451728..452696 (+) 969 WP_047920986.1 PilW family protein Machinery gene
  EGH20_RS02760 (EGH20_02760) pilK 452675..453283 (+) 609 WP_047920987.1 pilus assembly protein Machinery gene
  EGH20_RS02765 (EGH20_02765) pilL 453285..453758 (+) 474 WP_170959666.1 PilX family type IV pilin Machinery gene
  EGH20_RS02770 (EGH20_02770) - 453828..454136 (-) 309 WP_047920338.1 AzlD family protein -
  EGH20_RS13380 - 454133..454843 (-) 711 Protein_457 AzlC family ABC transporter permease -
  EGH20_RS02780 (EGH20_02780) dut 455009..455461 (+) 453 WP_010359930.1 dUTP diphosphatase -
  EGH20_RS02785 (EGH20_02785) dapC 455539..456726 (+) 1188 WP_123776160.1 succinyldiaminopimelate transaminase -
  EGH20_RS02790 (EGH20_02790) yaaA 457037..457816 (+) 780 WP_124723909.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 157 a.a.        Molecular weight: 17412.10 Da        Isoelectric Point: 9.3990

>NTDB_id=287315 EGH20_RS02765 WP_170959666.1 453285..453758(+) (pilL) [Neisseria gonorrhoeae strain FQ20]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDTLKSKLGIFVSGYKM
NPKIAKKYSVSVMFVDKEKSRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQAYSDTLSADSGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=287315 EGH20_RS02765 WP_170959666.1 453285..453758(+) (pilL) [Neisseria gonorrhoeae strain FQ20]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGAGCAAACTGGGAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAATGTTTGTCGATAAGGAAAAATCAAGGGCATACAGGTTGGTCGG
CGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGCCTATTCGGACACCTTGTCCGCAGATAGCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

93.631

100

0.936

  pilX Neisseria meningitidis 8013

85.987

100

0.86


Multiple sequence alignment