Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY83_RS15055 Genome accession   NZ_CP028745
Coordinates   3126290..3126919 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain A30     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3121290..3131919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY83_RS15040 (AOY83_15900) helD 3121532..3123586 (-) 2055 WP_240767934.1 DNA helicase IV -
  AOY83_RS15045 (AOY83_15905) yccF 3123709..3124155 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AOY83_RS15050 (AOY83_15910) yccS 3124165..3126327 (+) 2163 WP_000323868.1 YccS family putative transporter -
  AOY83_RS15055 (AOY83_15915) sxy/tfoX 3126290..3126919 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY83_RS15060 (AOY83_15920) sulA 3127138..3127647 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  AOY83_RS15065 (AOY83_15930) ompA 3128004..3129059 (+) 1056 WP_240767287.1 porin OmpA -
  AOY83_RS15070 (AOY83_15935) matP 3129135..3129587 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  AOY83_RS15075 (AOY83_15940) ycbZ 3129773..3131533 (+) 1761 WP_240767288.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=287125 AOY83_RS15055 WP_000839153.1 3126290..3126919(-) (sxy/tfoX) [Escherichia coli strain A30]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287125 AOY83_RS15055 WP_000839153.1 3126290..3126919(-) (sxy/tfoX) [Escherichia coli strain A30]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment