Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   EGH12_RS07720 Genome accession   NZ_CP034020
Coordinates   1317335..1317943 (-) Length   202 a.a.
NCBI ID   WP_047921847.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ48     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1312335..1322943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH12_RS07690 (EGH12_07690) yaaA 1312962..1313741 (-) 780 WP_003687925.1 peroxide stress protein YaaA -
  EGH12_RS07695 (EGH12_07695) dapC 1313897..1315084 (-) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  EGH12_RS07700 (EGH12_07700) dut 1315156..1315608 (-) 453 WP_003701071.1 dUTP diphosphatase -
  EGH12_RS07705 (EGH12_07705) - 1315774..1316485 (+) 712 Protein_1329 AzlC family ABC transporter permease -
  EGH12_RS07710 (EGH12_07710) - 1316482..1316790 (+) 309 WP_003706588.1 AzlD family protein -
  EGH12_RS07715 (EGH12_07715) pilL 1316860..1317333 (-) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  EGH12_RS07720 (EGH12_07720) pilK 1317335..1317943 (-) 609 WP_047921847.1 pilus assembly protein Machinery gene
  EGH12_RS07725 (EGH12_07725) pilJ 1317922..1318884 (-) 963 WP_047921846.1 PilW family protein Machinery gene
  EGH12_RS07730 (EGH12_07730) pilV/pilI 1318881..1319495 (-) 615 WP_012503479.1 type IV pilus modification protein PilV Regulator
  EGH12_RS07735 (EGH12_07735) pilH 1319527..1320189 (-) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH12_RS07740 (EGH12_07740) dnaB 1320446..1321849 (-) 1404 WP_012503477.1 replicative DNA helicase -
  EGH12_RS07750 (EGH12_07750) - 1322013..1322594 (+) 582 WP_003690895.1 superoxide dismutase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22039.97 Da        Isoelectric Point: 7.5810

>NTDB_id=287117 EGH12_RS07720 WP_047921847.1 1317335..1317943(-) (pilK) [Neisseria gonorrhoeae strain FQ48]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEEAFDNIVVKGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=287117 EGH12_RS07720 WP_047921847.1 1317335..1317943(-) (pilK) [Neisseria gonorrhoeae strain FQ48]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGGCTTTTGACAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

92.611

100

0.931